View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18893_low_3 (Length: 735)
Name: NF18893_low_3
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18893_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 123 - 719
Target Start/End: Complemental strand, 1695214 - 1694614
Alignment:
| Q |
123 |
gattacctaattattaatgttaaccattcatattatgctatttttgtctaatttcagaagaagctgctgctttatcttctcatagaggctgcnnnnnnng |
222 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1695214 |
gattacctaattattaatgtaaaccattcttattatgctatttttgtctaatttcagaagaagctgctgctttatcttctcatagaggctgctttttttg |
1695115 |
T |
|
| Q |
223 |
ctatcattgttctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1695114 |
ctatcattgttctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgc |
1695015 |
T |
|
| Q |
323 |
ttctcctcttactatcatggtaagtaaagtctattccattaat------ttcagatcatatgaagattatactgtattttctctaaacttgttacatatg |
416 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1695014 |
ttctcctcttacgatcatggtaagtaacttctattccattaattttatattcagatcatatgaagattatactgtattttctctaaacttgttac----- |
1694920 |
T |
|
| Q |
417 |
aatatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggaca |
516 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1694919 |
---atatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggaca |
1694823 |
T |
|
| Q |
517 |
acatatgctctgctccacccctttgacatttatgttctggtaattcatttaatttatattcctatagtattgttgtgacttgtgagttaat--------- |
607 |
Q |
| |
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| T |
1694822 |
acatatgctctgctccacccctttgacatttatgttctgg---------taatttatattcctatagtattgttgtgatttgtgagttaataattgtatg |
1694732 |
T |
|
| Q |
608 |
------aattggatgaatgatttatacttaacccatgttattaatatacatttttactgattattgcagatcagcaatggtattggagtaatctctggaa |
701 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1694731 |
taattcaattggattaaagatttatacttaacccatgttattaatatacatttttactgattattgcagatcagtaatggtattggagtaatctctggaa |
1694632 |
T |
|
| Q |
702 |
ctgttcagctcatactat |
719 |
Q |
| |
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|| ||||||||||||||| |
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| T |
1694631 |
ctattcagctcatactat |
1694614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 227 - 719
Target Start/End: Complemental strand, 1684687 - 1684193
Alignment:
| Q |
227 |
cattgttctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgcttct |
326 |
Q |
| |
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||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||| |
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| T |
1684687 |
cattgttctgataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttct |
1684588 |
T |
|
| Q |
327 |
cctcttactatcatggtaagtaaagtctattccattaatttcagatc---atatgaagattatactgtat------------tttctctaaacttgttac |
411 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| ||| || | || ||||||| ||||||||||| |||||||||||||||||| |
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| T |
1684587 |
cctcttacaatcatggtaagtaacttctattccaataactttatattcagatatgaa--ttatactgtatcttataaagtattttctctaaacttgttac |
1684490 |
T |
|
| Q |
412 |
atatgaatatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgct |
511 |
Q |
| |
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|||||| |||||| ||||| || |||||||| || ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
1684489 |
atatga---tatgatcaacagaaaaaggttataacgactaagagtgtgaaatacatgccattctggctctctgtgtttaacttcctcaatggactttgct |
1684393 |
T |
|
| Q |
512 |
ggacaacatatgctctgctccacccctttgacatttatgttctggtaattcatttaatttatattcctatagtattgttgtgacttgtgagttaataatt |
611 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1684392 |
ggacaacatatgctctgctccatccctttgacctttatgttctggtaatt---------tatattcctatagtattgttgtgacttgtgagttaataatt |
1684302 |
T |
|
| Q |
612 |
ggatgaatgatttatacttaacccatgtt-attaatatacatttttactgattattgcagatcagcaatggtattggagtaatctctggaactgttcagc |
710 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1684301 |
ggatgaatgatttatacttaacccatattaattaatatacactttcactgactactgcagatcagcaatggtattggagtaatctctggaactgttcagc |
1684202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 419 - 567
Target Start/End: Complemental strand, 1700012 - 1699864
Alignment:
| Q |
419 |
tatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggacaac |
518 |
Q |
| |
|
||||| |||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||| |
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| T |
1700012 |
tatataatgaacaggccaaggttataaaaaccaagagtgtgaaatacatgccattttggctctctctaaccaacttcctcaatggtttgtgctggacaac |
1699913 |
T |
|
| Q |
519 |
atatgctctgctccacccctttgacatttatgttctggtaattcattta |
567 |
Q |
| |
|
||||||||| ||||||| || || |||||||| |||||||| ||||| |
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| T |
1699912 |
atatgctctcatccacccattggatatttatgtcttggtaattaattta |
1699864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 1695322 - 1695248
Alignment:
| Q |
15 |
aggttgtctatcttaccatcttttttatctacgccaacaagaaaggaagggtacgtatgctttcacactataagc |
89 |
Q |
| |
|
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| T |
1695322 |
aggttgtctatcttaccatcttttttatctatgccaacaagaaaggaagggtacgtatgctttcacactataagc |
1695248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 1971478 - 1971405
Alignment:
| Q |
12 |
tcaaggttgtctatcttaccatcttttttatctacgccaacaagaaaggaagggtacgtatgctttcacactat |
85 |
Q |
| |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1971478 |
tcaagtttgtctatcttaccatcttttttatctatgccaacaagaaaggaagggtacgtatgctttcacactat |
1971405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 1684992 - 1684925
Alignment:
| Q |
18 |
ttgtctatcttaccatcttttttatctacgccaacaagaaaggaagggtacgtatgctttcacactat |
85 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
1684992 |
ttgtctatcttaccatctattttatctatgccaacaagaaaggaagggtatgtatgctttcacactat |
1684925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 171 - 347
Target Start/End: Complemental strand, 1700272 - 1700096
Alignment:
| Q |
171 |
taatttcagaagaagctgctgctttatcttctcatagaggctgcnnnnnnngctatcattgttctgataacaatgttggcattacatggcactaccaaga |
270 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||| | |||||||||| || | |
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|
| T |
1700272 |
taatttcagaaaaagttgctgctttatcttctcatcgaggctattttctttgctgtcattgttctaataacaatgttggcacttcatggcactaaaaaaa |
1700173 |
T |
|
| Q |
271 |
ggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgcttctcctcttactatcatggtaagt |
347 |
Q |
| |
|
| || ||||||||||| || | |||||| ||||||| | |||||||||| ||||||||||| |||||||||||| |
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|
| T |
1700172 |
gatcgttaattgttggtgttctatgtgatgtcttcaatgtcatgatgtatgcatctcctcttacaatcatggtaagt |
1700096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 420 - 561
Target Start/End: Complemental strand, 1674322 - 1674181
Alignment:
| Q |
420 |
atatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggacaaca |
519 |
Q |
| |
|
|||| ||||||||| || ||||||| ||| ||||||||||||||||||||||||| || |||||| | | ||| || |||||| | || ||||||||| |
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|
| T |
1674322 |
atataatgaacaggaaaatgttataaaaacaaagagtgtgaaatacatgccattcttgccctctctggctatctttcttaatggattgtgttggacaaca |
1674223 |
T |
|
| Q |
520 |
tatgctctgctccacccctttgacatttatgttctggtaatt |
561 |
Q |
| |
|
|||||||| || ||||||| ||||||||| | ||||||||| |
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| T |
1674222 |
tatgctctcatcaaccccttcgacatttatctcctggtaatt |
1674181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 290 - 362
Target Start/End: Complemental strand, 1971087 - 1971015
Alignment:
| Q |
290 |
tatttgtgatatcttcaacatattgatgtatgcttctcctcttactatcatggtaagtaaagtctattccatt |
362 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||||||||| |
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|
| T |
1971087 |
tatttgtgatatcttccccatattgatgtatgtctctcctcttaccatcgtggtaagtaacttctattccatt |
1971015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 1700767 - 1700732
Alignment:
| Q |
15 |
aggttgtctatcttaccatcttttttatctacgcca |
50 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1700767 |
aggttgtctatcttaccatcttttttatctatgcca |
1700732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 674 - 719
Target Start/End: Complemental strand, 1699335 - 1699290
Alignment:
| Q |
674 |
agcaatggtattggagtaatctctggaactgttcagctcatactat |
719 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||||||||||||| |
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|
| T |
1699335 |
agcaatggtattggagtggtttctggaattgttcagctcatactat |
1699290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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