View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18893_low_4 (Length: 731)
Name: NF18893_low_4
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18893_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 26284547 - 26285023
Alignment:
| Q |
1 |
atttaatttaaatattttgtagtgtagatgtactaggttagtggctgcagatggaattagattacaaaatgacgacaactacctaattttcatgttttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26284547 |
atttaatttaaatattttgtagtgtagatgtactaggttagtggctgcagatggaattagattacaaaatgacgacaactacctaattttcatgttttgg |
26284646 |
T |
|
| Q |
101 |
atagcgaagttttgaggaaacaatgcactttatttacattttggatactatatagtaaaagagaaagtatttcagatactttataacatgtacatgatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26284647 |
atagcgaagttttgaggaaacaatgcactttatttacattttggatactatatagtaaaagagaaagcatttcagatactttataacatgtacatgatgt |
26284746 |
T |
|
| Q |
201 |
actacatggttttgtaaccatttaattgttgtagcataccttgactttattgacagaaacaacctattttcctttatgtaacagatgctgtctttaacat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26284747 |
actacatggttttgtaaccatttaattgttgtagcataccttgactttattgacagaaacaacctattttcctttatgtaacagatgttgtctttaacat |
26284846 |
T |
|
| Q |
301 |
gagagtggcaactctttcattgagaaaacaagtcactatataatttgttgttttgtaacatgttttgccccttgttgtcaatagtcaaacgacatgtacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26284847 |
gagagtggcaactctttcattgagaaaacaagtcactatacaatttgttgttttgtaacatgttttgccccttgttgtcaatagtcaaaggacatgtacc |
26284946 |
T |
|
| Q |
401 |
aaactccactcgtgaatgaacttctcaaacttata-tacttgaacaatattggacaacctaacacaataatcaaaattag |
479 |
Q |
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|||||||||||||||||||||||||||||| |||| | |||||||||||||||||| ||||||||||||||||||||| |
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| T |
26284947 |
aaactccactcgtgaatgaacttctcaaacatatacttcttgaacaatattggaca---taacacaataatcaaaattag |
26285023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 479 - 721
Target Start/End: Original strand, 376976 - 377218
Alignment:
| Q |
479 |
ggctccgtctagcgtgagcggccaatatgggtctctcattgtgcaaatgagtttataaccgcatgatataagattaaaatatttgatggtcaagatgctt |
578 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
376976 |
ggctccgtctagcgtgagcggccaatatgggtctttcattgtgcaaatgagtttataaccgcatgatataagattaaaatatttgatggtcaagatgctt |
377075 |
T |
|
| Q |
579 |
tacctataacttgtttaaacctgattcaacagtttatggcacatttttaacatttggcacgtcgactatactaatttaaatttaaatttacgagagcacc |
678 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
377076 |
tatctataacttgtttaaacctgattcaacagtttgtggcacatttttaacatttggcacgtcgactatactaattaaaatttaaatttacgagaacacc |
377175 |
T |
|
| Q |
679 |
cattatttatgtttattttcagtgacctccatgcttgatgatg |
721 |
Q |
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| T |
377176 |
cattatttatgtttattttcagtgacctccatgcttaatgatg |
377218 |
T |
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