View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18893_low_5 (Length: 583)
Name: NF18893_low_5
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18893_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 12819661 - 12819336
Alignment:
| Q |
1 |
aaatttcttgtgatataaaccatttttcattcactagatgctgcttaattgcctgcatttttcggttagttttgcgattgtgattgacaatgatttactt |
100 |
Q |
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| T |
12819661 |
aaatttcttgtgatataaaccatttttcattcactagatgttg-tgcattgcctgcatttttcggttagatttgcgattgtgattgtcaatgatttactt |
12819563 |
T |
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| Q |
101 |
gaattgatggctactgctgcaagaagcacaaacttatgactttaatttaacagcttgagactaaattcataactcatcattgcacccgatatgaataata |
200 |
Q |
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| T |
12819562 |
gaattgatggctactgctgcaagaagcacaaacttatgactttaatttaacagcttgagactaaattcataactcatcattgcacccgatatgaataata |
12819463 |
T |
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| Q |
201 |
ctgcatagtactctatgatacatacctcaatggataatgataactgattcatacgaagaatgtcgtggtcctttgacattgttccttatattgcttttct |
300 |
Q |
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| T |
12819462 |
ctgcatagtacgctatgatacatacctcaattgataatgataactgattcatacgaagaatgccgtggtcctttgacattgttccttatattgcttttct |
12819363 |
T |
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| Q |
301 |
gatatctttgcatgacctgttgagttt |
327 |
Q |
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| T |
12819362 |
gagatctttgcaggacctgttgagttt |
12819336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 336 - 467
Target Start/End: Complemental strand, 12819285 - 12819154
Alignment:
| Q |
336 |
ttgctttcaccaacttttgttttcaagaaaatagtgcagaaaatatggtctatatctatatactaaaagaaaatctctctttgaatgttttcccactctc |
435 |
Q |
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| T |
12819285 |
ttgctttcaccaacttttgttttcaagaaaatagtgcagaaaatatggtctatatctatatactataagaaaatctctctttgaatgttttcccactctc |
12819186 |
T |
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| Q |
436 |
gattttattgggtgtcttatatatttttaaca |
467 |
Q |
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| T |
12819185 |
gatttcattgggtgtcttatatatttttaaca |
12819154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 500 - 583
Target Start/End: Complemental strand, 12819138 - 12819055
Alignment:
| Q |
500 |
tttgcaagaatctagggacttctttaccataattacttaattattatatatacatagcttctgttgtgtgtaaccacttgactc |
583 |
Q |
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| T |
12819138 |
tttgcaagaatctagggacttctttaccataattacttaattattatatatacatagcttcagttgtgtgtaatcacttgactc |
12819055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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