View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18893_low_7 (Length: 500)
Name: NF18893_low_7
Description: NF18893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18893_low_7 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 490
Target Start/End: Complemental strand, 11238229 - 11237758
Alignment:
| Q |
19 |
atgaagtgcacaattaaagaatcgatnnnnnnnnntctaatcatcgaataaaataaatctaacaccacaattcctcaggcaacatatttcatggtctaat |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11238229 |
atgaagtgcacaattaaagaatcgatcaaaaaaactctaatcatcgaataaaataaatctaacaccacaattcctcaggcaacatatttcatcgtctaat |
11238130 |
T |
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| Q |
119 |
aatgaacaataatccatgaattaatcagcaaacaaaaggtacataacacaaatagaaattaacatacaggttgcagttagggagttgaagaatcccggtt |
218 |
Q |
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| T |
11238129 |
aatgaacaataatccatgaagtaatcagcaaacaaaaggtacataacacaaatagaaattaacatacaggttgcagttagggagttgaagaatcccggtt |
11238030 |
T |
|
| Q |
219 |
cttcataaacctcatgcacaagtgacataatatagcatataacatcctcattactacatgcattctactattattaagaacatggtgatatcaaactctc |
318 |
Q |
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| T |
11238029 |
cttcataaacctcatgcacaagtgacataacatagcatataacatcctcattactacatgcattctactattattaagaacatggtgatatcaaactctc |
11237930 |
T |
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| Q |
319 |
ttggtagacttcaaggaccatccaacctttgatgtttggaaattcaagagttttagaagtaccatctctagaattgtaaacgaccaactcgaactgattc |
418 |
Q |
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| T |
11237929 |
ttggtagacttcaaggaccatccaacctttgatgtttggaaattcaagagttttagaagtaccatctctagaattgtaaacgaccaactcgaactgattc |
11237830 |
T |
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| Q |
419 |
tccagcagcacctgatcatcctcagtaacataaagtgcattggtataaggacaatgcccaacattccctatg |
490 |
Q |
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| T |
11237829 |
tccagcagcacctgatcatcctcagtaacataaagtgcattggtataaggacaacgcccaacattccctatg |
11237758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 219 - 471
Target Start/End: Original strand, 7168415 - 7168657
Alignment:
| Q |
219 |
cttcataaacctcatgcacaagtgacataatatagcatataacatcctcattactacatgcattctactattattaagaacatggtgatatcaaactctc |
318 |
Q |
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| T |
7168415 |
cttcataaacctcatgcacaagtgacgtaacatagtatcta-------cattattacatgcattctaccgtta---agaacaaggtgatatcaaactctc |
7168504 |
T |
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| Q |
319 |
ttggtagacttcaaggaccatccaacctttgatgtttggaaattcaagagttttagaagtaccatctctagaattgtaaacgaccaactcgaactgattc |
418 |
Q |
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| T |
7168505 |
ctgataaacttgagggaccaaccaccgattgatgtgttgaatttcaggagttttaaacgtaccatctctagaattgtaaacaaccaactcagcttgatac |
7168604 |
T |
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| Q |
419 |
tccagcagcacctgatcatcctcagtaacataaagtgcattggtataaggaca |
471 |
Q |
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| T |
7168605 |
ttgagcaacacttggtcatcctcagtaagataaagtgccttggtataaggaca |
7168657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 290 - 470
Target Start/End: Original strand, 7199764 - 7199944
Alignment:
| Q |
290 |
tattaagaacatggtgatatcaaactctcttggtagacttcaaggaccatccaacctttgatgtttggaaattcaagagttttagaagtaccatctctag |
389 |
Q |
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| T |
7199764 |
tattaagaacaaagtgatatcaaactctgttggtagacttgtggaaccatccaaccatctgtgctttggatttcaagactcttaaaagtaccatccctag |
7199863 |
T |
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| Q |
390 |
aattgtaaacgaccaactcgaactgattctccagcagcacctgatcatcctcagtaacataaagtgcattggtataaggac |
470 |
Q |
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| T |
7199864 |
aattgtaaagaaccaactttgactgacactctagcagcacttgatcatcctcataaacataaaatgccttggtataaggac |
7199944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 364 - 469
Target Start/End: Original strand, 7174233 - 7174338
Alignment:
| Q |
364 |
aagagttttagaagtaccatctctagaattgtaaacgaccaactcgaactgattctccagcagcacctgatcatcctcagtaacataaagtgcattggta |
463 |
Q |
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|||||| ||| ||||||||||||||||||||||||| ||||||| | | || ||| |||||||| |||||||||||| |||||||||||| || ||| |
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| T |
7174233 |
aagagtcttaaaagtaccatctctagaattgtaaacaaccaacttcatcatatactctagcagcacttgatcatcctcataaacataaagtgcctttgta |
7174332 |
T |
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| Q |
464 |
taagga |
469 |
Q |
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|||||| |
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| T |
7174333 |
taagga |
7174338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 7173914 - 7173985
Alignment:
| Q |
115 |
taataatgaacaataatccatgaattaatcagcaaacaaaaggtacataacacaaa-tagaaattaacatac |
185 |
Q |
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| T |
7173914 |
taataatgaaagataatccatgaagtaaccagcaaacataaggcacctaacacaaattaaaaattaacatac |
7173985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 29434 - 29344
Alignment:
| Q |
78 |
taacaccacaattcctcaggcaacatatttcatggtctaataatgaacaataatccatgaattaatcagcaaacaaaaggtacataacaca |
168 |
Q |
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| T |
29434 |
taacatcacaatttctcaggcaacatatttcatcgtctaataacgaacaataatccatgaagtaaccagcaaacaaaaggtacataacaca |
29344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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