View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18894_high_14 (Length: 248)

Name: NF18894_high_14
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18894_high_14
NF18894_high_14
[»] chr1 (5 HSPs)
chr1 (3-238)||(3450464-3450699)
chr1 (105-222)||(5529832-5529949)
chr1 (103-183)||(9553085-9553165)
chr1 (130-185)||(2998931-2998986)
chr1 (120-155)||(28620447-28620482)
[»] chr3 (5 HSPs)
chr3 (126-185)||(3941810-3941869)
chr3 (128-185)||(43838822-43838879)
chr3 (115-198)||(17571988-17572071)
chr3 (134-236)||(34979124-34979226)
chr3 (127-160)||(54896451-54896484)
[»] chr6 (7 HSPs)
chr6 (127-185)||(21021092-21021150)
chr6 (105-217)||(10219564-10219676)
chr6 (128-236)||(25085033-25085141)
chr6 (131-185)||(21020904-21020958)
chr6 (129-182)||(9762615-9762668)
chr6 (130-222)||(22260415-22260508)
chr6 (105-153)||(19264753-19264800)
[»] chr2 (9 HSPs)
chr2 (133-183)||(43191977-43192027)
chr2 (134-199)||(13478756-13478820)
chr2 (134-184)||(28779821-28779871)
chr2 (139-235)||(20167430-20167526)
chr2 (134-181)||(6923848-6923895)
chr2 (173-236)||(15301535-15301598)
chr2 (126-185)||(29926887-29926946)
chr2 (130-199)||(6788471-6788540)
chr2 (126-154)||(19206532-19206560)
[»] chr8 (3 HSPs)
chr8 (128-236)||(21600452-21600560)
chr8 (128-236)||(33508630-33508738)
chr8 (105-154)||(29911606-29911655)
[»] chr5 (2 HSPs)
chr5 (130-238)||(917104-917212)
chr5 (134-183)||(28297487-28297536)
[»] chr4 (5 HSPs)
chr4 (130-185)||(4161882-4161937)
chr4 (130-236)||(32934088-32934194)
chr4 (130-191)||(46804807-46804868)
chr4 (133-185)||(14810441-14810493)
chr4 (178-238)||(16970787-16970847)
[»] chr7 (3 HSPs)
chr7 (109-183)||(39608582-39608656)
chr7 (105-153)||(1247525-1247573)
chr7 (130-162)||(23474559-23474591)
[»] scaffold0005 (1 HSPs)
scaffold0005 (133-185)||(29235-29287)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 3450699 - 3450464
Alignment:
Q  3 taatccatttatgaatctttcttacttttagtggtattaatacgttaattgatatgcatttcattaataaagatatagtcatttacccgttctttcaatt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  | ||||||||||    
T  3450699 taatccatttatgaatctttcttacttttagtggtattaatacgttaattgatatgcatttcatcaataaagatatagtcatttacgagctctttcaatt 3450600  T
Q  103 tataacgagtagtcaccatagctctttaatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagtatctgaagctaaaacac 202  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||  ||||||||||||||||||||||||||||||||||||||    
T  3450599 tataacgattagtcaccatagctctttaatgtatcaaaattttaaaatagttgttgattgaccattttattagtcaaaatagtatctgaagctaaaacac 3450500  T
Q  203 ttcgttaatattgtcttatttgtctttcaatatatt 238  Q
    |||||||||  |||||||||||||||||||||||||    
T  3450499 ttcgttaatgctgtcttatttgtctttcaatatatt 3450464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 5529949 - 5529832
Alignment:
Q  105 taacgagtagtcaccatagctctttaatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagtatctgaagctaaaacactt 204  Q
    |||||||||||||  |||   ||||||| |||||||||||||||||| |   | |||   || ||| |||||||||||||| |||||   ||||| ||||    
T  5529949 taacgagtagtcataataatcctttaatatatcaaaattttaaaataatccctaattatgcactttgttagtcaaaatagtttctgacattaaaatactt 5529850  T
Q  205 cgttaatattgtcttatt 222  Q
    ||||||||||||||||||    
T  5529849 cgttaatattgtcttatt 5529832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 9553165 - 9553085
Alignment:
Q  103 tataacgagtagtcaccatagctctttaatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaata 183  Q
    |||||||| || |||| |||| |||| ||||||||||| |||||||||||| ||| ||||   ||||||| ||||||||||    
T  9553165 tataacgaataatcacaatagttcttcaatgtatcaaacttttaaaatagtcattgattgagtattttataagtcaaaata 9553085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 2998931 - 2998986
Alignment:
Q  130 aatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagt 185  Q
    |||||||||||||||||||||||||  | |||| ||| ||||||| ||||||||||    
T  2998931 aatgtatcaaaattttaaaatagttcataattgtacactttattaatcaaaatagt 2998986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 155
Target Start/End: Original strand, 28620447 - 28620482
Alignment:
Q  120 atagctctttaatgtatcaaaattttaaaatagtta 155  Q
    |||| |||||||||||||||||||||||||||||||    
T  28620447 atagttctttaatgtatcaaaattttaaaatagtta 28620482  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 3941869 - 3941810
Alignment:
Q  126 ctttaatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagt 185  Q
    ||||||||||||||||||||||||||||  || |||| ||||||| ||||||||||||||    
T  3941869 ctttaatgtatcaaaattttaaaatagtccttaattgaacattttgttagtcaaaatagt 3941810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 43838879 - 43838822
Alignment:
Q  128 ttaatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagt 185  Q
    |||||||||||||||||||||||||| ||| ||||  |||||| ||||||||||||||    
T  43838879 ttaatgtatcaaaattttaaaatagtcattgattgtgcattttgttagtcaaaatagt 43838822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 17572071 - 17571988
Alignment:
Q  115 tcaccatagctctttaatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagtatctgaagctaaa 198  Q
    |||| |||| |||| ||||||| |||||| ||||||||||  |||||   ||||||||||||||||||||| ||||| ||||||    
T  17572071 tcacaatagttcttcaatgtattaaaattctaaaatagtttattattctgcattttattagtcaaaatagtctctgatgctaaa 17571988  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 236
Target Start/End: Complemental strand, 34979226 - 34979124
Alignment:
Q  134 tatcaaaattttaaaatagttatttattggacattttattagtcaaaatagtatctgaagctaaaacacttcgttaatattgtcttatttgtctttcaat 233  Q
    |||| |||||||||||||||| || ||||  |||||| |||||||||||||| ||| |   ||||| | |||||||||||| || |||| ||| ||||||    
T  34979226 tatcgaaattttaaaatagtttttaattgtgcattttgttagtcaaaatagtctctcacattaaaatatttcgttaatattatcatattagtcattcaat 34979127  T
Q  234 ata 236  Q
    |||    
T  34979126 ata 34979124  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 54896451 - 54896484
Alignment:
Q  127 tttaatgtatcaaaattttaaaatagttatttat 160  Q
    ||||||||||| ||||||||||||||||||||||    
T  54896451 tttaatgtatcgaaattttaaaatagttatttat 54896484  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 21021150 - 21021092
Alignment:
Q  127 tttaatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagt 185  Q
    ||||| ||||||||||||||||||||||||| |||   |||||||||||||||||||||    
T  21021150 tttaaagtatcaaaattttaaaatagttattgattatgcattttattagtcaaaatagt 21021092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 10219564 - 10219676
Alignment:
Q  105 taacgagtagtcaccatagctctttaatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagtatctgaagctaaaacactt 204  Q
    |||||||||| ||| ||||  | ||||||| || |||||| |||||||||  | ||||  || ||| |||||||||||||| ||||| | ||||| | ||    
T  10219564 taacgagtagccacaatagtcccttaatgtgtcgaaatttcaaaatagttcctgattgtgcactttgttagtcaaaatagtctctgacgttaaaataatt 10219663  T
Q  205 cgttaatattgtc 217  Q
    |||||||||||||    
T  10219664 cgttaatattgtc 10219676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 25085141 - 25085033
Alignment:
Q  128 ttaatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagtatctgaagctaaaacacttcgttaatattgtcttatttgtct 227  Q
    |||||||||||||||||||||||| || || ||||  || ||| |||||||||||||| | | |   ||||| | || |||||||||||| ||||  |||    
T  25085141 ttaatgtatcaaaattttaaaatactttttgattgtgcactttgttagtcaaaatagtctttaacattaaaataatttgttaatattgtcatattattct 25085042  T
Q  228 ttcaatata 236  Q
    |||||||||    
T  25085041 ttcaatata 25085033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 21020904 - 21020958
Alignment:
Q  131 atgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagt 185  Q
    ||||||||||||||||||||||| ||  |||  ||||||| ||||||||||||||    
T  21020904 atgtatcaaaattttaaaatagtcatcgattatacatttttttagtcaaaatagt 21020958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 9762668 - 9762615
Alignment:
Q  129 taatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaat 182  Q
    |||||||||||||||||||||||||| || ||||  || | |||||||||||||    
T  9762668 taatgtatcaaaattttaaaatagtttttgattgtgcactatattagtcaaaat 9762615  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 22260415 - 22260508
Alignment:
Q  130 aatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagtatctgaa-gctaaaacacttcgttaatattgtcttatt 222  Q
    |||||||||||||||||||||||| ||| ||||  || |||  |||| |||||||||||| ||   ||||||| || |||||||||||| ||||    
T  22260415 aatgtatcaaaattttaaaatagtcattgattgtgcactttgctagttaaaatagtatcttaacattaaaacaatttgttaatattgtcatatt 22260508  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 19264800 - 19264753
Alignment:
Q  105 taacgagtagtcaccatagctctttaatgtatcaaaattttaaaatagt 153  Q
    |||||||||||||| |||| ||| ||||||||| |||||||||||||||    
T  19264800 taacgagtagtcacaatag-tctctaatgtatcgaaattttaaaatagt 19264753  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 43192027 - 43191977
Alignment:
Q  133 gtatcaaaattttaaaatagttatttattggacattttattagtcaaaata 183  Q
    |||||||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  43192027 gtatcaaaattttaaaatagttttttattgtacattttattaatcaaaata 43191977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 13478820 - 13478756
Alignment:
Q  134 tatcaaaattttaaaatagttatttattggacattttattagtcaaaatagtatctgaagctaaaa 199  Q
    ||||||||||||||||||||| || ||||  ||||||||||||||||||||| | |||||||||||    
T  13478820 tatcaaaattttaaaatagtttttgattgtgcattttattagtcaaaatagt-tttgaagctaaaa 13478756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 28779871 - 28779821
Alignment:
Q  134 tatcaaaattttaaaatagttatttattggacattttattagtcaaaatag 184  Q
    |||||||||||||||||||||||| |||| ||| | |||||||||||||||    
T  28779871 tatcaaaattttaaaatagttattgattgtacactatattagtcaaaatag 28779821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 20167430 - 20167526
Alignment:
Q  139 aaattttaaaatagttatttattggacattttattagtcaaaatagtatctgaagctaaaacacttcgttaatattgtcttatttgtctttcaatat 235  Q
    ||||||||||||||||||| || | | || || |||||||||| ||| |||||   ||||| | ||||||| ||||||| |||| ||||||||||||    
T  20167430 aaattttaaaatagttattgatcgtagatattgttagtcaaaacagtctctgacattaaaatatttcgttagtattgtcgtattagtctttcaatat 20167526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 6923895 - 6923848
Alignment:
Q  134 tatcaaaattttaaaatagttatttattggacattttattagtcaaaa 181  Q
    |||||||||||||||||||||||| |||| ||| | ||||||||||||    
T  6923895 tatcaaaattttaaaatagttattgattgtacactatattagtcaaaa 6923848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 15301598 - 15301535
Alignment:
Q  173 tagtcaaaatagtatctgaagctaaaacacttcgttaatattgtcttatttgtctttcaatata 236  Q
    ||||||||||||| |||||   ||||| |||||||||||||||||||||| ||  |||||||||    
T  15301598 tagtcaaaatagtctctgacattaaaatacttcgttaatattgtcttattagtacttcaatata 15301535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 29926946 - 29926887
Alignment:
Q  126 ctttaatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagt 185  Q
    |||| ||||||||||||||||||||||| | | ||||  ||||| |||||||||||||||    
T  29926946 ctttgatgtatcaaaattttaaaatagtcaatgattgtgcatttcattagtcaaaatagt 29926887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 6788540 - 6788471
Alignment:
Q  130 aatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagtatctgaagctaaaa 199  Q
    |||||||||||||||||||||||||  | ||||  || ||| ||||||| |||||| ||||| |||||||    
T  6788540 aatgtatcaaaattttaaaatagtttctgattgtgcactttgttagtcagaatagtctctgatgctaaaa 6788471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 19206560 - 19206532
Alignment:
Q  126 ctttaatgtatcaaaattttaaaatagtt 154  Q
    |||||||||||||||||||||||||||||    
T  19206560 ctttaatgtatcaaaattttaaaatagtt 19206532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 21600452 - 21600560
Alignment:
Q  128 ttaatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagtatctgaagctaaaacacttcgttaatattgtcttatttgtct 227  Q
    |||||||||||||||||||||||||| ||| ||||  |||||  ||| | ||| ||||  |||| | ||||| | ||| ||||||||||| ||||||||     
T  21600452 ttaatgtatcaaaattttaaaatagtcattgattgtgcatttcgttaataaaattagtcactgatgttaaaatatttcattaatattgtcatatttgtcc 21600551  T
Q  228 ttcaatata 236  Q
    |||||||||    
T  21600552 ttcaatata 21600560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 33508738 - 33508630
Alignment:
Q  128 ttaatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagtatctgaagctaaaacacttcgttaatattgtcttatttgtct 227  Q
    |||||||||| |||||| |||||||||||| | ||  ||||| |||| |||||||| | |||||   ||||| ||||| |||||||| || |||| |||     
T  33508738 ttaatgtatcgaaatttcaaaatagttattgagtgtgcatttcattaatcaaaataatctctgacattaaaatacttcattaatattatcgtattagtcc 33508639  T
Q  228 ttcaatata 236  Q
    |||||||||    
T  33508638 ttcaatata 33508630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 29911655 - 29911606
Alignment:
Q  105 taacgagtagtcaccatagctctttaatgtatcaaaattttaaaatagtt 154  Q
    |||||||| | ||| |||| | ||||||||||||||||||||||||||||    
T  29911655 taacgagtggccacaatagttgtttaatgtatcaaaattttaaaatagtt 29911606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 917212 - 917104
Alignment:
Q  130 aatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagtatctgaagctaaaacacttcgttaatattgtcttatttgtcttt 229  Q
    |||||||| |||||||||||||||  || |||| ||| ||||||  |||||||||| ||| |   ||||| | || |||||||||||| |||| ||| ||    
T  917212 aatgtatcgaaattttaaaatagtctttgattgtacactttatttatcaaaatagtctctcacaataaaatattttgttaatattgtcatattagtcatt 917113  T
Q  230 caatatatt 238  Q
    |||||||||    
T  917112 caatatatt 917104  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 28297536 - 28297487
Alignment:
Q  134 tatcaaaattttaaaatagttatttattggacattttattagtcaaaata 183  Q
    |||||| |||||||||||||| || |||  ||||||||||||||||||||    
T  28297536 tatcaacattttaaaatagttgttgattatacattttattagtcaaaata 28297487  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 4161937 - 4161882
Alignment:
Q  130 aatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagt 185  Q
    ||||||||| ||||||| |||||||||| ||||  |||||| ||||||||||||||    
T  4161937 aatgtatcacaattttacaatagttattaattgtgcattttgttagtcaaaatagt 4161882  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 32934194 - 32934088
Alignment:
Q  130 aatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagtatctgaagctaaaacacttcgttaatattgtcttatttgtcttt 229  Q
    ||||||||||||||||||||||||| || ||||  || |||  ||||||||||||| ||| |   ||||| | || ||||||||||||  ||| ||||||    
T  32934194 aatgtatcaaaattttaaaatagtttttgattgtgcactttgctagtcaaaatagtttctaacattaaaataatttgttaatattgtcacattagtcttt 32934095  T
Q  230 caatata 236  Q
     ||||||    
T  32934094 taatata 32934088  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 46804807 - 46804868
Alignment:
Q  130 aatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagtatctga 191  Q
    ||||||||||||||||||||||||   | |||| ||| ||| |||||||||||||| |||||    
T  46804807 aatgtatcaaaattttaaaatagtctctgattgtacactttgttagtcaaaatagtctctga 46804868  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 14810493 - 14810441
Alignment:
Q  133 gtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagt 185  Q
    |||||||||||| ||||||||| || ||||  || ||||||||||||||||||    
T  14810493 gtatcaaaatttcaaaatagttcttgattgtccactttattagtcaaaatagt 14810441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 16970787 - 16970847
Alignment:
Q  178 aaaatagtatctgaagctaaaacacttcgttaatattgtcttatttgtctttcaatatatt 238  Q
    |||||||||||||| | |||||  |||||||| ||||||| |||| |||| ||||||||||    
T  16970787 aaaatagtatctgacgttaaaatgcttcgttactattgtcatattagtctctcaatatatt 16970847  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 39608656 - 39608582
Alignment:
Q  109 gagtagtcaccatagctctttaatgtatcaaaattttaaaatagttatttattggacattttattagtcaaaata 183  Q
    ||||||| || |||| | || ||||||||||||||||||||||||| |  |||| ||| ||| ||||||||||||    
T  39608656 gagtagttacaatagtttttcaatgtatcaaaattttaaaatagttttgaattgtacaatttgttagtcaaaata 39608582  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 1247525 - 1247573
Alignment:
Q  105 taacgagtagtcaccatagctctttaatgtatcaaaattttaaaatagt 153  Q
    |||||||||||||| |||| |  ||||||||| ||||||||||||||||    
T  1247525 taacgagtagtcacaatagtttcttaatgtattaaaattttaaaatagt 1247573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 23474559 - 23474591
Alignment:
Q  130 aatgtatcaaaattttaaaatagttatttattg 162  Q
    |||||||||||||||||||||||||||| ||||    
T  23474559 aatgtatcaaaattttaaaatagttattgattg 23474591  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 29235 - 29287
Alignment:
Q  133 gtatcaaaattttaaaatagttatttattggacattttattagtcaaaatagt 185  Q
    |||||||||||| ||||||||| || ||||  || ||||||||||||||||||    
T  29235 gtatcaaaatttcaaaatagttcttgattgtccactttattagtcaaaatagt 29287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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