View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18894_high_16 (Length: 232)

Name: NF18894_high_16
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18894_high_16
NF18894_high_16
[»] chr1 (4 HSPs)
chr1 (20-219)||(43383168-43383367)
chr1 (137-219)||(40949650-40949732)
chr1 (137-193)||(29998621-29998677)
chr1 (48-91)||(29998519-29998562)
[»] chr8 (3 HSPs)
chr8 (20-219)||(10898671-10898870)
chr8 (40-219)||(23159253-23159434)
chr8 (141-193)||(12111727-12111778)
[»] scaffold0038 (1 HSPs)
scaffold0038 (137-219)||(109868-109950)
[»] chr6 (5 HSPs)
chr6 (137-219)||(28318762-28318844)
chr6 (137-219)||(22827094-22827176)
chr6 (137-193)||(16275960-16276016)
chr6 (48-91)||(16275858-16275901)
chr6 (48-91)||(22826991-22827034)
[»] chr3 (5 HSPs)
chr3 (137-219)||(42397251-42397334)
chr3 (137-219)||(32972233-32972315)
chr3 (40-108)||(20930362-20930430)
chr3 (48-108)||(32972131-32972191)
chr3 (48-91)||(42397149-42397192)
[»] chr2 (4 HSPs)
chr2 (137-219)||(39835960-39836042)
chr2 (137-219)||(19044355-19044437)
chr2 (48-91)||(19044496-19044539)
chr2 (48-91)||(39835858-39835901)
[»] scaffold0567 (1 HSPs)
scaffold0567 (147-212)||(1-66)
[»] scaffold0059 (2 HSPs)
scaffold0059 (40-108)||(65106-65174)
scaffold0059 (48-108)||(73211-73271)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 43383168 - 43383367
Alignment:
Q  20 gaaggataacatgtaccaatatagcagctataatttaataagggaacaaaaattagtagaatcgatgtctatgtttcacataagaaacatcattcaaagc 119  Q
    ||||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||||||| |||||||||||     
T  43383168 gaaggataacatgtaccaacatagcagctataatttaatatggtagcaaaaattagtagaatcgatgtctatgttccacataagaaatatcattcaaagt 43383267  T
Q  120 aagacnnnnnnnnnnnnctctataaggaatgatttgatggtgtataaaaagcattgattaagttcatattatttctttccataaaaaagttcatattatt 219  Q
    |||||            ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43383268 aagacttttttgtttttctctataagaaatgatttggtggtgtataaaaagcattgattaagttcatattatttctttccatgaaaaagttcatattatt 43383367  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 40949732 - 40949650
Alignment:
Q  137 ctctataaggaatgatttgatggtgtataaaaagcattgattaagttcatattatttctttccataaaaaagttcatattatt 219  Q
    |||||||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  40949732 ctctataaggaatgatgtggtggtgtataaaaaacattgattaagttcatattatttgtttctataaaaaggttcatattatt 40949650  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 29998621 - 29998677
Alignment:
Q  137 ctctataaggaatgatttgatggtgtataaaaagcattgattaagttcatattattt 193  Q
    |||||||||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  29998621 ctctataaggaatgatgtggtggtgtataaaaaacattgattaagttcatattattt 29998677  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 29998519 - 29998562
Alignment:
Q  48 tataatttaataagggaacaaaaattagtagaatcgatgtctat 91  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
T  29998519 tataatttaataaggaagcaaaaattagtagaatcgatgtctat 29998562  T

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Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 10898671 - 10898870
Alignment:
Q  20 gaaggataacatgtaccaatatagcagctataatttaataagggaacaaaaattagtagaatcgatgtctatgtttcacataagaaacatcattcaaagc 119  Q
    ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| ||||  |||||||| || ||| ||  ||||||||||||||||    
T  10898671 gaaggataacatgtaccaacatggcagctataatttaataagggagcaaaaattagtggaatgaatgtctatattccacgtagaaaacatcattcaaagc 10898770  T
Q  120 aagacnnnnnnnnnnnnctctataaggaatgatttgatggtgtataaaaagcattgattaagttcatattatttctttccataaaaaagttcatattatt 219  Q
    || ||            ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10898771 aaaacatttttgtttttctctataaggaatgatttggtggtgcataaaaagcattgattaagttcatattatttctttccataaaaaagttcatagtatt 10898870  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 40 - 219
Target Start/End: Complemental strand, 23159434 - 23159253
Alignment:
Q  40 atagcagctataatttaataagggaacaaaaattagtagaatcgatgtctatgtttcacataa--gaaacatcattcaaagcaagacnnnnnnnnnnnnc 137  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||| |||||||| ||  |||||   ||||||||  |||||||||  |            |    
T  23159434 atagctgctattatttaataagggagcaaaaattagtagaatcaatgtctatattctacatataggaaacatccgtcaaagcaaagcatttttagttttc 23159335  T
Q  138 tctataaggaatgatttgatggtgtataaaaagcattgattaagttcatattatttctttccataaaaaagttcatattatt 219  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||    
T  23159334 tctataaggaatgatttagtggtgtataaaaagcattgattaagttcatattatttctttcgaaaaaaaagttcataatatt 23159253  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 12111778 - 12111727
Alignment:
Q  141 ataaggaatgatttgatggtgtataaaaagcattgattaagttcatattattt 193  Q
    |||||||||||||||||||| | |||||  ||| |||||||||||||||||||    
T  12111778 ataaggaatgatttgatggtatttaaaat-catagattaagttcatattattt 12111727  T

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Target: scaffold0038 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 109950 - 109868
Alignment:
Q  137 ctctataaggaatgatttgatggtgtataaaaagcattgattaagttcatattatttctttccataaaaaagttcatattatt 219  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  109950 ctctataaggaatgatgtggtggtgtataaaaagcattgattaagttcatattatttgtttctataaaaaggttcatattatt 109868  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 28318844 - 28318762
Alignment:
Q  137 ctctataaggaatgatttgatggtgtataaaaagcattgattaagttcatattatttctttccataaaaaagttcatattatt 219  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  28318844 ctctataaggaatgatgtggtggtgtataaaaagcattgattaagttcatattatttgtttctataaaaaggttcatattatt 28318762  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 22827094 - 22827176
Alignment:
Q  137 ctctataaggaatgatttgatggtgtataaaaagcattgattaagttcatattatttctttccataaaaaagttcatattatt 219  Q
    |||||||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  22827094 ctctataaggaatgatgtggtggtgtataaaaaacattgattaagttcatattatttgtttctataaaaaggttcatattatt 22827176  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 16275960 - 16276016
Alignment:
Q  137 ctctataaggaatgatttgatggtgtataaaaagcattgattaagttcatattattt 193  Q
    |||||||||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  16275960 ctctataaggaatgatgtggtggtgtataaaaaacattgattaagttcatattattt 16276016  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 16275858 - 16275901
Alignment:
Q  48 tataatttaataagggaacaaaaattagtagaatcgatgtctat 91  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
T  16275858 tataatttaataaggaagcaaaaattagtagaatcgatgtctat 16275901  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 22826991 - 22827034
Alignment:
Q  48 tataatttaataagggaacaaaaattagtagaatcgatgtctat 91  Q
    ||||||||||||||| | |||||||||||||||||||| |||||    
T  22826991 tataatttaataaggaagcaaaaattagtagaatcgatatctat 22827034  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 42397251 - 42397334
Alignment:
Q  137 ctctataaggaatgatttgatggtgtataaaaagcattgattaagttcatattatttctttccataaaaaa-gttcatattatt 219  Q
    |||||||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  42397251 ctctataaggaatgatgtggtggtgtataaaaaacattgattaagttcatattatttgtttctataaaaaaggttcatattatt 42397334  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 32972233 - 32972315
Alignment:
Q  137 ctctataaggaatgatttgatggtgtataaaaagcattgattaagttcatattatttctttccataaaaaagttcatattatt 219  Q
    |||||||||||||||| || ||||||||||||  ||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  32972233 ctctataaggaatgatgtggtggtgtataaaatacattgattaagttcatattatttgtttctataaaaaggttcatattatt 32972315  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 20930362 - 20930430
Alignment:
Q  40 atagcagctataatttaataagggaacaaaaattagtagaatcgatgtctatgtttcacataagaaaca 108  Q
    ||||||| ||||||||||||||| | |||||||||||||||||||||| ||| ||||| ||| ||||||    
T  20930362 atagcagttataatttaataaggaagcaaaaattagtagaatcgatgtgtatatttcagataggaaaca 20930430  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 32972131 - 32972191
Alignment:
Q  48 tataatttaataagggaacaaaaattagtagaatcgatgtctatgtttcacataagaaaca 108  Q
    ||||||||||||||| | |||||||||||||||||||||||||| || || ||| ||||||    
T  32972131 tataatttaataaggaagcaaaaattagtagaatcgatgtctattttccagataggaaaca 32972191  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 42397149 - 42397192
Alignment:
Q  48 tataatttaataagggaacaaaaattagtagaatcgatgtctat 91  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
T  42397149 tataatttaataaggaagcaaaaattagtagaatcgatgtctat 42397192  T

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Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 39835960 - 39836042
Alignment:
Q  137 ctctataaggaatgatttgatggtgtataaaaagcattgattaagttcatattatttctttccataaaaaagttcatattatt 219  Q
    |||| ||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  39835960 ctctgtaaggaatgatgtggtggtgtataaaaaacattgattaagttcatattatttgtttctataaaaaggttcatattatt 39836042  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 19044437 - 19044355
Alignment:
Q  137 ctctataaggaatgatttgatggtgtataaaaagcattgattaagttcatattatttctttccataaaaaagttcatattatt 219  Q
    |||||||||||||||| || |||| |||||||| |||| |||||||||||||||||| |||| ||||||| ||||||||||||    
T  19044437 ctctataaggaatgatgtggtggtatataaaaaacattcattaagttcatattatttgtttctataaaaaggttcatattatt 19044355  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 19044539 - 19044496
Alignment:
Q  48 tataatttaataagggaacaaaaattagtagaatcgatgtctat 91  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
T  19044539 tataatttaataaggaagcaaaaattagtagaatcgatgtctat 19044496  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 39835858 - 39835901
Alignment:
Q  48 tataatttaataagggaacaaaaattagtagaatcgatgtctat 91  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
T  39835858 tataatttaataaggaagcaaaaattagtagaatcgatgtctat 39835901  T

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Target: scaffold0567 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 1 - 66
Alignment:
Q  147 aatgatttgatggtgtataaaaagcattgattaagttcatattatttctttccataaaaaagttca 212  Q
    |||||| || ||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||||    
T  1 aatgatgtggtggtgtataaaaaacattgattaagttcatattatttgtttctataaaaaggttca 66  T

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Target: scaffold0059 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 65174 - 65106
Alignment:
Q  40 atagcagctataatttaataagggaacaaaaattagtagaatcgatgtctatgtttcacataagaaaca 108  Q
    ||||||| ||||||||||||||| | |||||||||||||||||||||| ||| ||||| ||| ||||||    
T  65174 atagcagttataatttaataaggaagcaaaaattagtagaatcgatgtgtatatttcagataggaaaca 65106  T

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Target: scaffold0059; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 73271 - 73211
Alignment:
Q  48 tataatttaataagggaacaaaaattagtagaatcgatgtctatgtttcacataagaaaca 108  Q
    ||||||||||||||| | |||||||||||||||||||||||||| ||||| ||| ||||||    
T  73271 tataatttaataaggaagcaaaaattagtagaatcgatgtctatatttcagataggaaaca 73211  T

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