View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18894_high_19 (Length: 215)
Name: NF18894_high_19
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18894_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 24161595 - 24161413
Alignment:
| Q |
16 |
aatatataatccaaatttttcatgtaactatgataatcagaagttcggctcagaggtatgtaaaacctgacaaatatttatttcttctaaaaattataat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
24161595 |
aatatataatccaaatttttcatgtaactctgataatccgaagttcggctcagaggtatgtaaaacctgacaaatatttatttcttccaaaaatcataat |
24161496 |
T |
|
| Q |
116 |
tgagttctcccaaacaattcgtctttaaaggaaattcattaaccacttaattagaaaaacaaatggtatactcgctctacaac |
198 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
24161495 |
tgagttctcacaaacaattcgtctttaaaggaaattcattaaccacttaattagaaaatcaaatggtatactctctctacaac |
24161413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University