View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18894_high_5 (Length: 433)
Name: NF18894_high_5
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18894_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 54844322 - 54844723
Alignment:
| Q |
1 |
cggaacaagaacaatttattaaattctattacattatagtgagtcactaacaattagacaataaataaggaagcttaccgcgttgatgatcaagaggtct |
100 |
Q |
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| T |
54844322 |
cggaacaagaacaatttattaaattctattacattatagtgagtcactaacaattagacaataaataaggaagcttaccgcgttgatgatcaagaggtct |
54844421 |
T |
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| Q |
101 |
gagaatttcagcaacaatttgaccaacactttgaaaagacttcaaattatcctctgatttgttaaattccttaattgatttacgcaaatcgagtttaact |
200 |
Q |
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| T |
54844422 |
gagaatttcagcaacaatttgaccaacactttgaaaagacttcaaatcatcctctgatttgttaaattccttaattgatttacgcaaatcgagtttaact |
54844521 |
T |
|
| Q |
201 |
gagaagagaaagaggtattagctagcagagttgataataaggaaaaaagaatagggtttggtggtgggaatgaacctgaattgcgtctggattcaagctc |
300 |
Q |
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| T |
54844522 |
gagaagagaaagagttattagctagcagagttgataataaggaaaaaagaatagggtttggtggtgggaatgaacctgaattgcgtctggattcaagctc |
54844621 |
T |
|
| Q |
301 |
cttcttattgaggagttttttgcgataatcattaaccactttacgacgttgaacgccatcatcactctcgcttaacgaagacgacatcgttcaactcaac |
400 |
Q |
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| T |
54844622 |
cttcttattgaggagttttttgcgataatcattaaccactttacgacgttgaacgccatcatcactctcgcttaacgaagacgacatcgttcaactcaac |
54844721 |
T |
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| Q |
401 |
tc |
402 |
Q |
| |
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|| |
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| T |
54844722 |
tc |
54844723 |
T |
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