View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18894_low_10 (Length: 330)

Name: NF18894_low_10
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18894_low_10
NF18894_low_10
[»] chr1 (3 HSPs)
chr1 (199-315)||(43382934-43383050)
chr1 (123-167)||(29998417-29998461)
chr1 (123-167)||(43383083-43383127)
[»] scaffold0059 (4 HSPs)
scaffold0059 (219-315)||(73421-73517)
scaffold0059 (204-315)||(65300-65411)
scaffold0059 (123-162)||(65223-65262)
scaffold0059 (123-162)||(73329-73368)
[»] chr8 (4 HSPs)
chr8 (204-315)||(45529466-45529577)
chr8 (204-315)||(23159662-23159772)
chr8 (123-167)||(10898587-10898631)
chr8 (123-160)||(45529389-45529426)
[»] chr3 (5 HSPs)
chr3 (204-315)||(20930125-20930236)
chr3 (204-315)||(32971882-32971994)
chr3 (123-167)||(42397047-42397091)
chr3 (123-162)||(20930274-20930313)
chr3 (123-167)||(32972027-32972071)
[»] scaffold0038 (1 HSPs)
scaffold0038 (123-167)||(110107-110151)
[»] chr6 (3 HSPs)
chr6 (123-167)||(16275756-16275800)
chr6 (123-167)||(28319001-28319045)
chr6 (123-167)||(22826892-22826936)
[»] chr2 (2 HSPs)
chr2 (123-167)||(39835759-39835803)
chr2 (123-159)||(19044595-19044631)
[»] chr4 (1 HSPs)
chr4 (123-167)||(12574898-12574942)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 199 - 315
Target Start/End: Complemental strand, 43383050 - 43382934
Alignment:
Q  199 aaaatccttaattttcgcacataaatttttcaaatcacatgaaaaaatacagcccaaattttatatcaattatcatgatgcaaaacaaaaaatatgttag 298  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| ||    
T  43383050 aaaaaccttaattttcgcacataaatttttcaaatcacatgaaaaaatacagctcaaattttatatcaattctcatgatgtaaaacaaaaaatatgtaag 43382951  T
Q  299 ttataattagttatgat 315  Q
     ||||||||||||||||    
T  43382950 ctataattagttatgat 43382934  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 29998461 - 29998417
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgctatcaata 167  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  29998461 atctcttatttgcatatcttgtgcctagtttagatgctattaata 29998417  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 43383127 - 43383083
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgctatcaata 167  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  43383127 atctcttatttgcatatcttgtgcctagtttaaatgctatcaata 43383083  T

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Target: scaffold0059 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 73421 - 73517
Alignment:
Q  219 ataaatttttcaaatcacatgaaaaaatacagcccaaattttatatcaattatcatgatgcaaaacaaaaaatatgttagttataattagttatgat 315  Q
    |||||||||||||||||||| ||||||| ||||  |||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||    
T  73421 ataaatttttcaaatcacataaaaaaatgcagcataaattttatatcaattctcatgatgcaaaacaaaaaatatgtaaattataattagttatgat 73517  T

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Target: scaffold0059; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 204 - 315
Target Start/End: Original strand, 65300 - 65411
Alignment:
Q  204 ccttaattttcgcacataaatttttcaaatcacatgaaaaaatacagcccaaattttatatcaattatcatgatgcaaaacaaaaaatatgttagttata 303  Q
    |||||| ||||||  |||||||||||||||||||| ||||||| ||||  |||||||||||||||| ||||||||||| | ||||||||||| | |||||    
T  65300 ccttaaatttcgcctataaatttttcaaatcacataaaaaaatgcagcataaattttatatcaattctcatgatgcaacataaaaaatatgtaaattata 65399  T
Q  304 attagttatgat 315  Q
    ||||||||||||    
T  65400 attagttatgat 65411  T

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Target: scaffold0059; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 65223 - 65262
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgctat 162  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  65223 atctcttatttgcatatcttgtgcctagtttagatgctat 65262  T

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Target: scaffold0059; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 73329 - 73368
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgctat 162  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  73329 atctcttatttgcatatcttgtgcctagtttagatgctat 73368  T

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Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 204 - 315
Target Start/End: Original strand, 45529466 - 45529577
Alignment:
Q  204 ccttaattttcgcacataaatttttcaaatcacatgaaaaaatacagcccaaattttatatcaattatcatgatgcaaaacaaaaaatatgttagttata 303  Q
    |||||| ||||||  |||||||||||||||||||| ||||||| ||||  |||||||||||||||| |||||||||||||||||||||||||    ||||    
T  45529466 ccttaaatttcgcctataaatttttcaaatcacataaaaaaatgcagcataaattttatatcaattctcatgatgcaaaacaaaaaatatgtatactata 45529565  T
Q  304 attagttatgat 315  Q
    ||||||||||||    
T  45529566 attagttatgat 45529577  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 204 - 315
Target Start/End: Original strand, 23159662 - 23159772
Alignment:
Q  204 ccttaattttcgcacataaatttttcaaatcacatgaaaaaatacagcccaaattttatatcaattatcatgatgcaaaacaaaaaatatgttagttata 303  Q
    |||||| |||||||||||| |||||||||     |||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||| |  ||||    
T  23159662 ccttaaatttcgcacataagtttttcaaaattt-tgaaaacatacagccgaaattttatataaattctcatgatgcaaaacaaaaaatatgtaaactata 23159760  T
Q  304 attagttatgat 315  Q
    ||||||||||||    
T  23159761 attagttatgat 23159772  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 10898631 - 10898587
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgctatcaata 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10898631 atctcttatttgcatatcttgtgcctagtttagatgctatcaata 10898587  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 45529389 - 45529426
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgct 160  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  45529389 atctcttatttgcatatcttgtgcctaatttagatgct 45529426  T

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Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 204 - 315
Target Start/End: Complemental strand, 20930236 - 20930125
Alignment:
Q  204 ccttaattttcgcacataaatttttcaaatcacatgaaaaaatacagcccaaattttatatcaattatcatgatgcaaaacaaaaaatatgttagttata 303  Q
    |||||| ||||||  |||||||||||||||||||| ||||||| ||||  |||||||||||||||| ||||||||||| | ||||||||||| | |||||    
T  20930236 ccttaaatttcgcctataaatttttcaaatcacataaaaaaatgcagcataaattttatatcaattctcatgatgcaacataaaaaatatgtaaattata 20930137  T
Q  304 attagttatgat 315  Q
    ||||||||||||    
T  20930136 attagttatgat 20930125  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 204 - 315
Target Start/End: Complemental strand, 32971994 - 32971882
Alignment:
Q  204 ccttaattttcgcacataaatttttcaaatcacatgaaaaaa-tacagcccaaattttatatcaattatcatgatgcaaaacaaaaaatatgttagttat 302  Q
    |||||| ||||||  |||||||||||||||||||| |||||| | ||||  |||||||||||||||| ||||||||||||||||||||||||| |  |||    
T  32971994 ccttaaatttcgcctataaatttttcaaatcacataaaaaaaatgcagcataaattttatatcaattctcatgatgcaaaacaaaaaatatgtaaactat 32971895  T
Q  303 aattagttatgat 315  Q
    |||||||||||||    
T  32971894 aattagttatgat 32971882  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 42397091 - 42397047
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgctatcaata 167  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  42397091 atctcttatttgcatatcttgtgcctagtttagatgctattaata 42397047  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 20930313 - 20930274
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgctat 162  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20930313 atctcttatttgcatatcttgtgcctagtttagatgctat 20930274  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 32972071 - 32972027
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgctatcaata 167  Q
    |||| |||||| |||||||||||||||||||||||||||| ||||    
T  32972071 atcttttatttacatatcttgtgcctagtttagatgctattaata 32972027  T

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Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 110107 - 110151
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgctatcaata 167  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  110107 atctcttatttgcatatcttgtgcctagtttagatgctattaata 110151  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 16275800 - 16275756
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgctatcaata 167  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  16275800 atctcttatttgcatatcttgtgcctagtttagatgctattaata 16275756  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 28319001 - 28319045
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgctatcaata 167  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  28319001 atctcttatttgcatatcttgtgcctagtttagatgctattaata 28319045  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 22826936 - 22826892
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgctatcaata 167  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||    
T  22826936 atctcttatttgcatatcttgtgcctagtatagatgctattaata 22826892  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 39835803 - 39835759
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgctatcaata 167  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  39835803 atctcttatttgcatatcttgtgcctagtttagatgctattaata 39835759  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 19044595 - 19044631
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgc 159  Q
    |||||||||||||||||||||||||||||||||||||    
T  19044595 atctcttatttgcatatcttgtgcctagtttagatgc 19044631  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 12574942 - 12574898
Alignment:
Q  123 atctcttatttgcatatcttgtgcctagtttagatgctatcaata 167  Q
    |||||||||||||| ||||| || ||| |||||||||||||||||    
T  12574942 atctcttatttgcacatcttatgactaatttagatgctatcaata 12574898  T

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