View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18894_low_11 (Length: 315)
Name: NF18894_low_11
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18894_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 44914801 - 44915091
Alignment:
| Q |
15 |
agcaactgcttatatatgtgagtgaggaataaacttttacatagcaaatatagcattaattagcttcatatgcttaccaatatgtgcgtgattgaactaa |
114 |
Q |
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| T |
44914801 |
agcaattgcttatatatgtgagtgaggaataaacttttacatagcaaatatagcattaattagcttcatatgcttaccaatatgtgcgtgattgaactaa |
44914900 |
T |
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| Q |
115 |
ctaattgtcaatgcatcaatttaaaccaagttctttgcatttggtatttgtgttgttcctatttcactggaattatgtaacttataggtttgaaattaga |
214 |
Q |
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| T |
44914901 |
ctaattgtcaatgcatcaatttaaaccaagttctttgcatttggtatttgtgttgttcctatttcactggaattatgtaacttataggtttgaaattaga |
44915000 |
T |
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| Q |
215 |
taagagagaatacggaaacttggaagctagtgctatatttggatcaacaaacagtattttcaaccactaaacatagtaaaatgtccctatg |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44915001 |
taagagagaatacggaaacttggaagctagtgctatatttggatcaacaaacagtattttcaaccactaaacatagtgaaatgtccctatg |
44915091 |
T |
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