View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18894_low_13 (Length: 277)
Name: NF18894_low_13
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18894_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 38823030 - 38822857
Alignment:
| Q |
98 |
tcaggtttgattttcttttcgaatggcagttgaggtgggattaatgcataccttcaaagcaatgtactcccaatcttgtagtaagagtaaacattaacag |
197 |
Q |
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| T |
38823030 |
tcaggtttgattttcttttcgaatggcggttgtggtgggattaatgcataccttccaagcaatgtactcccaatcttgtagtaagagtaaacattaacag |
38822931 |
T |
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| Q |
198 |
tagcaagtttaagaagttctatgctaagggatttactaccccaattaaagtccaggcttaaaggtctctgctcc |
271 |
Q |
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| T |
38822930 |
tagcaagtttaagaagttatatgctaagggatttactaccccaattaaagtccaggctcagaggtctgtgctcc |
38822857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 38823148 - 38823074
Alignment:
| Q |
18 |
aaaatatctattttagaaaaatttaataaacttaggcacattaaggcaagtcttccttagctcattataatataa |
92 |
Q |
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| T |
38823148 |
aaaatatctattttagaaaaatttaataaacttaggcacattaaagcaagtcttccttagctcattataatataa |
38823074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 38831456 - 38831402
Alignment:
| Q |
154 |
aagcaatgtactcccaatcttgtagtaagagtaaacattaacagtagcaagttta |
208 |
Q |
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| T |
38831456 |
aagcaatgtgctcccgatcatgtagtaagagtaaacattaatagtagcaagttta |
38831402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 38814426 - 38814373
Alignment:
| Q |
154 |
aagcaatgtactcccaatcttgtagtaagagtaaacattaacagtagcaagttt |
207 |
Q |
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| T |
38814426 |
aagcaatttgctcccaatcttgtaataagaataaacattaacagtagcaagttt |
38814373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 38818812 - 38818761
Alignment:
| Q |
174 |
tgtagtaagagtaaacattaacagtagcaagtttaagaagttctatgctaag |
225 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
38818812 |
tgtaataagagtaaacattaacagtagcaagtttagcaagttctttgctaag |
38818761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 17198081 - 17198153
Alignment:
| Q |
145 |
ataccttcaaagcaatgtactcccaatcttgtagtaagagtaaacattaacagtagcaagtttaagaagttct |
217 |
Q |
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| T |
17198081 |
ataccttccaagcaatttactcccaatcttatgataagagtaaacattaacagtagcaagtttagcaagttct |
17198153 |
T |
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