View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18894_low_14 (Length: 270)
Name: NF18894_low_14
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18894_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 38822856 - 38822597
Alignment:
| Q |
1 |
cttaaatcaatcccattcacaacaaaagctaattcatcaagaccacaaaaactcaagcgaggcatatccataacagtagcagcaagtggtccaagttcaa |
100 |
Q |
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| T |
38822856 |
cttaaatcaatcccattcacaacaaaagctaattcatcaagaccacaaaaactcaagcgaggcatatccataacagtagcagcaagtggtccaagttcaa |
38822757 |
T |
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| Q |
101 |
atgcatttat---gtatccaatcccacactgcttctctaacttaaccaatttatctttgataccaacgcctacaaaggtataatctggcatagagagaaa |
197 |
Q |
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| T |
38822756 |
atgcatttattatgtatccaatcccacactgcttctctaacttaaccaatttatctttgataccaacgcctacaaaggtataatctggcatagagagaaa |
38822657 |
T |
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| Q |
198 |
attatgcatcaatggaagaggtaaaaatctatgaaaataattaccacttagcagaataat |
257 |
Q |
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| T |
38822656 |
attatgcatcaatggaagaggtaaaaatctatgaaaacaattaccaattagcagaataat |
38822597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 38814293 - 38814142
Alignment:
| Q |
22 |
acaaaagctaattcatcaagaccacaaaaactcaagcgaggcatatccataacagtagcagcaagtggtccaagttcaaatgcatttatgtatccaatcc |
121 |
Q |
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| T |
38814293 |
acaaaagctaattcatcaacaccacaaaaactcaaatgaggcctcttcataacacttgcagcaaagggtccaagttcaacagcatttctacatccaaatc |
38814194 |
T |
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| Q |
122 |
cacactgcttctctaacttaaccaatttatctttgataccaacgcctacaaa |
173 |
Q |
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| T |
38814193 |
catactgcttctccaacttagccaaattctctttgattccaactccaacaaa |
38814142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 38831259 - 38831149
Alignment:
| Q |
77 |
tagcagcaagtggtccaagttcaaatgcatttatgtatccaatcccacactgcttctctaacttaaccaatttatctttgataccaacgcctacaaaggt |
176 |
Q |
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| T |
38831259 |
tagcagcaagaggtccaagttccacagcatttctgcatctaatcccatattccttcttaagcttagccaaatcatctttaataccaacactgacaaaggt |
38831160 |
T |
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| Q |
177 |
ataatctggca |
187 |
Q |
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| T |
38831159 |
ataatctggca |
38831149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 38820908 - 38820756
Alignment:
| Q |
33 |
ttcatcaagaccacaaaaactcaagcgaggcatatccataacagtagcagcaagtggtccaagttcaaatgcatttatgtatccaatcccacactgcttc |
132 |
Q |
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| T |
38820908 |
ttcatcaacgccgcaaaaactcaaactaggcatcttcctaacactagcagccaagggtccaagttccacagcatttctgcatctaaccccatattccttc |
38820809 |
T |
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| Q |
133 |
tctaacttaaccaatttatctttgataccaacgcctacaaaggtataatctgg |
185 |
Q |
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|| | ||| |||| |||| ||||||||||| || ||||||||||||||||| |
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| T |
38820808 |
tcaagtttagccaaattatgattgataccaacaccaacaaaggtataatctgg |
38820756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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