View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18894_low_2 (Length: 639)
Name: NF18894_low_2
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18894_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 97 - 622
Target Start/End: Original strand, 29053446 - 29053983
Alignment:
| Q |
97 |
tattgagttagactaacatgaaaagaagaaaacattaggaatgatattgaaaaggtacataatatcttctgccaagcatgatattgtgatgaagtagtgt |
196 |
Q |
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| T |
29053446 |
tattgagttagactaacatgaaaagaagaaaacactaggaatgatattgaaaaggtacataatatcttctgccaagcatgatattgtgatgaagcagtgt |
29053545 |
T |
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| Q |
197 |
tcatagtttttgcatacaaacttgtacgaagacaacactaacaatgactat------------attattattctgcagtagtttttatgccacttgccct |
284 |
Q |
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| T |
29053546 |
tcatagtttttgcatacaaacttgtacgaagacaacactaacaatgactatcaggaaggctatattattattctgcagtagtttttatgccacttgccct |
29053645 |
T |
|
| Q |
285 |
acttacaaacaaactcacaaaatgctaactcaaacactaacgcaggatcattaattcaatcctctagagcactgtctacaatctggccctttgggtgtgt |
384 |
Q |
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| T |
29053646 |
acttacaaacaaactcacaaaatgctaactcaaacactaacgcaggatcattaattcaatcctctagagcactgtctacaatctggccctttgggcgtgt |
29053745 |
T |
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| Q |
385 |
gacaagtttcaacatgattacattaatacttattgttcaaagatgaacttaatgtcattccttaagaaattatataattacactggcatctcaatggccc |
484 |
Q |
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| T |
29053746 |
gacaagtttcaacatgattacattaatacttattgttcaaagatgaacttaatgtcactccttaagaaattatataattacactggcatctcaatggccc |
29053845 |
T |
|
| Q |
485 |
acttcaccataatatgtactttcggcggtaagacaaacacccaatgctggtagcagcaaacggtagatgatttcaccaccaaaagaaatacagtagatga |
584 |
Q |
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| T |
29053846 |
acttcaccataatatgtactttcggcggtaagacaaacacccaatgctggtagcagcaaacggtagatgatttcaccaccaaaagaaatacagtagatga |
29053945 |
T |
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| Q |
585 |
gtttcatataaaaatgcattattatatatggcaggaca |
622 |
Q |
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| T |
29053946 |
gtttcatataaaaatgcattattatatatggcaggaca |
29053983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 29053077 - 29053162
Alignment:
| Q |
13 |
aaaatatcagcaagggttctgaagcataaataaaaggaccacattttcattcaagtcttaaaatgcttatataagacataaattta |
98 |
Q |
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| T |
29053077 |
aaaatatcagcaagggttctgaagcataaataaaaggaccacattttcattcaagtcttaaaatgcttatataagacataaattta |
29053162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 29057692 - 29057737
Alignment:
| Q |
50 |
accacattttcattcaagtcttaaaatgcttatataagacataaat |
95 |
Q |
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| T |
29057692 |
accacattttcatgcaagtcttaaaatgcttatattagacataaat |
29057737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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