View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18894_low_21 (Length: 225)
Name: NF18894_low_21
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18894_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 33302439 - 33302629
Alignment:
| Q |
17 |
cacagacgacaccaactagctcaattctataaggcttttgagtatgatgttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatc |
116 |
Q |
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| T |
33302439 |
cacaaacgacaccaactagctcaattctataaggcttttgagtatgatgttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatc |
33302538 |
T |
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| Q |
117 |
ctcatctggtctataccctactcccattctgtacttatatttgtgaacatttcttgccatagcaatagtctgctcgaaaaaaggttcccat |
207 |
Q |
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| T |
33302539 |
ctcatctggtctataccctactcccattctgtatttatatttgtgaacatttcttgccatagcaatagtctgctcgaaaaaaggttcccat |
33302629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 61 - 207
Target Start/End: Original strand, 33250572 - 33250718
Alignment:
| Q |
61 |
tgatgttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatcctcatctggtctataccctactcccattctgtacttatatttgt |
160 |
Q |
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| T |
33250572 |
tgatgttcttctccctcattcacttgctcccagtaattttcattaattgtaccatccgcagctactttatatcctacccccattctgtacttatgtttgt |
33250671 |
T |
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| Q |
161 |
gaacatttcttgccatagcaatagtctgctcgaaaaaaggttcccat |
207 |
Q |
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| T |
33250672 |
gaacatttcttgccatagcaatagtctgctccacaaaaggttcccat |
33250718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 61 - 207
Target Start/End: Original strand, 33270744 - 33270890
Alignment:
| Q |
61 |
tgatgttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatcctcatctggtctataccctactcccattctgtacttatatttgt |
160 |
Q |
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| T |
33270744 |
tgatgttcttctccctcattcacttgctcccagtaattttcattaattgtaccatccgcagctactttatatcctacccccattctgtacttatgtttgt |
33270843 |
T |
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| Q |
161 |
gaacatttcttgccatagcaatagtctgctcgaaaaaaggttcccat |
207 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
33270844 |
gaacatttcttgccatagcaatagtctgctccacaaaaggttcccat |
33270890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 207
Target Start/End: Original strand, 33310472 - 33310615
Alignment:
| Q |
64 |
tgttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatcctcatctggtctataccctactcccattctgtacttatatttgtgaa |
163 |
Q |
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||||||||||| ||||||||||||||||| |||||||| || ||||| ||||| | | || |||||| ||| ||||||| ||| |||||||||||| |
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| T |
33310472 |
tgttcttctgcttcattcacttgctcccaataattttcggttattgtcccatctttagcttctctatatcctggccccattcgatacctatatttgtgaa |
33310571 |
T |
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| Q |
164 |
catttcttgccatagcaatagtctgctcgaaaaaaggttcccat |
207 |
Q |
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| T |
33310572 |
tatttcttgccatagctatagtttgctctacaaaaggttcccat |
33310615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 33250506 - 33250539
Alignment:
| Q |
25 |
acaccaactagctcaattctataaggcttttgag |
58 |
Q |
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| T |
33250506 |
acaccaactagctcaattctgtaaggcttttgag |
33250539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 33270678 - 33270711
Alignment:
| Q |
25 |
acaccaactagctcaattctataaggcttttgag |
58 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
33270678 |
acaccaactagctcaattctgtaaggcttttgag |
33270711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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