View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18894_low_3 (Length: 463)
Name: NF18894_low_3
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18894_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 204 - 447
Target Start/End: Original strand, 42306895 - 42307137
Alignment:
| Q |
204 |
tgaactcccctctaacatgctcttgaactctgctttcaaacgtagtcataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcaca |
303 |
Q |
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| T |
42306895 |
tgaactcccctctaacatgctcttgaactccgctttcaaacgtggtcataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcaca |
42306994 |
T |
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| Q |
304 |
gtaagtgttgcttcacataacaagagtctactagtttcctcaggtgacccaacaacctggcaaagacattcacattaatacacaacaaataggattaata |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42306995 |
gtaagtgttgcttcacataacaagagtctactagtttcctcaggtgacccaacaacctggcaaagacattcacattaatacacaacaaatagg-ttaata |
42307093 |
T |
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| Q |
404 |
tgaacgacattcaaattaatagacagaatttatggccttggata |
447 |
Q |
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| T |
42307094 |
tgaacgacattcaaattaatagacagaatttatggccttggata |
42307137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 42306681 - 42306901
Alignment:
| Q |
13 |
aatatagagaatcaagaagaaagaatcacaaaggagattagaattttaatagaataccatataataaaggttacaaagattatatataataaacttaaaa |
112 |
Q |
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| T |
42306681 |
aatatagagaatcaagaagagagaataacaaaggagattagaattttaacagaataccatataataaaggttacaaagattatatataataaacttaaaa |
42306780 |
T |
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| Q |
113 |
ggactagattactaatcatccctcaaagtcacgatgcattaacagcgatagcctaaaaggtttgtcaactacgacaccaaaacgtactcgatgaactccc |
212 |
Q |
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| T |
42306781 |
ggactagattactaatcatccctcaaagtcacaatgcattaacagcgatagcctaaaaggtttgtcaactacgatgccaaaacgtactcgatgaactccc |
42306880 |
T |
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| Q |
213 |
ctctaacatgctcttgaactc |
233 |
Q |
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| T |
42306881 |
ctctaacatgctcttgaactc |
42306901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 249 - 397
Target Start/End: Complemental strand, 51571484 - 51571336
Alignment:
| Q |
249 |
tcataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcacagtaagtgttgcttcacataacaagagtctactagtttcctcaggt |
348 |
Q |
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| T |
51571484 |
tcataacttgtaaactggatcaattccaaggagatagaagcaatgtctcatcacaacaagtgttgcttcacataacaagagtctactagtttcctcaggc |
51571385 |
T |
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| Q |
349 |
gacccaacaacctggcaaagacattcacattaatacacaacaaatagga |
397 |
Q |
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| T |
51571384 |
gacccaacaacctgacaaaggcattcaaattaatacacagcaaatagga |
51571336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 251 - 397
Target Start/End: Original strand, 47971560 - 47971706
Alignment:
| Q |
251 |
ataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcacagtaagtgttgcttcacataacaagagtctactagtttcctcaggtga |
350 |
Q |
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||||||||| |||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| || || |
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| T |
47971560 |
ataacttgtaaactggatcaattccaaggagatagaagcaatgcctcatcacaataagtgttgcttcacataacaagagtctactagtttcctccggcga |
47971659 |
T |
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| Q |
351 |
cccaacaacctggcaaagacattcacattaatacacaacaaatagga |
397 |
Q |
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| T |
47971660 |
cccaacaacctgacaaaggcattcacattaatacacagcaaatagga |
47971706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 368
Target Start/End: Complemental strand, 34035367 - 34035250
Alignment:
| Q |
251 |
ataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcacagtaagtgttgcttcacataacaagagtctactagtttcctcaggtga |
350 |
Q |
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|||| |||| ||| |||||||||||||||||||| ||||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
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| T |
34035367 |
ataatttgtaaacaggttcaattccaaggagataaaagcactttctcatcacaactgcagttgcttcacatagcaaaagtctactagtttcctcaggtgt |
34035268 |
T |
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| Q |
351 |
cccaacaacctggcaaag |
368 |
Q |
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|| |||||||| ||||| |
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| T |
34035267 |
tcctacaacctgccaaag |
34035250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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