View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18894_low_4 (Length: 443)
Name: NF18894_low_4
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18894_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 219 - 429
Target Start/End: Complemental strand, 30723054 - 30722836
Alignment:
| Q |
219 |
tacttgtaattgtatgtaaccgcgtaagtgtataatgaatatgaaatcttaaccaggctaaacagtcaatccgaacactagtttttaggaaaaggatgat |
318 |
Q |
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| T |
30723054 |
tacttgtaattgtatgtaaccgcgtaagtgtataatgaatatgaaatcttaaccaggctaaacagtcaatccgaacactagtttttaggaaaaggatgat |
30722955 |
T |
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| Q |
319 |
gttatgc--------agtgttcaaaatttggttgatttgcagtttttatttgaatgagtttggatattaagaggccatatatagtctctggagtatcttg |
410 |
Q |
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| T |
30722954 |
gttatgcagtgatgcagtgttcaaaatttggttgatttgcagtttttatttgaatgagtttggatattaagaggccatatatagtctctggagtatcttg |
30722855 |
T |
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| Q |
411 |
taaaggatgatgttatatg |
429 |
Q |
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| T |
30722854 |
taaaggatgatgttatatg |
30722836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30727112 - 30726885
Alignment:
| Q |
1 |
tgtatattattgtgtaagaatattgttatgttttggtaaaaagaaggaannnnnnnnnn----ggtgtaaaaagaaggaaatgaatgtgatgattttttg |
96 |
Q |
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| T |
30727112 |
tgtatattattgtgtaagaatattgttatgttttggtaaaaagaaggatttttttttttttttggtgtaaaaagaaggaaatgaatgtgatgattttttg |
30727013 |
T |
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| Q |
97 |
tttaagcttaagtaattgtaaaaagannnnnnn-aacaaaaatcattttaaaaaacgttatatgtggatatctaaatatactcatggatatctaaaaatt |
195 |
Q |
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| T |
30727012 |
tttaagcttaagtaattgtaaaaagattttttttaacaaaaatcattttaaaaaacgttatatgtggatatctaaatatactcatggatatctaaaaatt |
30726913 |
T |
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| Q |
196 |
tatggatttaaccgcataacggatactt |
223 |
Q |
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| T |
30726912 |
tatggatttaaccgcataacggatactt |
30726885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 764616 - 764570
Alignment:
| Q |
3 |
tatattattgtgtaagaatattgttatgttttggtaaaaagaaggaa |
49 |
Q |
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| T |
764616 |
tatattattatgtatggatattgttatgttttggtaaaaagaaggaa |
764570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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