View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18894_low_6 (Length: 388)
Name: NF18894_low_6
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18894_low_6 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 179 - 388
Target Start/End: Complemental strand, 4242771 - 4242559
Alignment:
| Q |
179 |
cagttacatacaaacaatacctaacatttttactagttacacctaatattatctttggttacacccctacgcgtcccggttagtacctcaatagc---gt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| ||||||||| |||||| || |
|
|
| T |
4242771 |
cagttacatacaaacaatacctaacatttttactagttacaccttaaattatctttgattacacccctacgcgtcccgattagtacctaaatagctgcgt |
4242672 |
T |
|
| Q |
276 |
cattgtcccaatcgctaagattttgatgtcaaaatgaaaataattttgacaaattaaaaagcttgcttaataggagtcgtttttgggtctcagaaagcaa |
375 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| |
|
|
| T |
4242671 |
tattgtcccaatcgccaagattttgatgtcaaaatgaaaatagttttgacaaattaaaaagcttgcttaataggagtcgtttttgtgtttcaaaaagcaa |
4242572 |
T |
|
| Q |
376 |
gtaatgtttgttc |
388 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4242571 |
gtaatgtttgttc |
4242559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 187 - 388
Target Start/End: Complemental strand, 4285977 - 4285773
Alignment:
| Q |
187 |
tacaaacaatacctaacatttttactagttacacctaatattatctttggttacacccctacgcgtcccggttagtacctcaatagc---gtcattgtcc |
283 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
4285977 |
tacatacaatacctaacatttttactagttacacctaatattttctttgattacacccctacgcgtcccaattagtacctcaatagctgcgtcattgtcc |
4285878 |
T |
|
| Q |
284 |
caatcgctaagattttgatgtcaaaatgaaaataattttgacaaattaaaaagcttgcttaataggagtcgtttttgggtctcagaaagcaagtaatgtt |
383 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||| |
|
|
| T |
4285877 |
caatcgccaagattttgatgtcaaaatgaaaatagttttgacaaattaaaaagcttgcttaataggagtcatttttgggtttcaaaaattaagtaatgtt |
4285778 |
T |
|
| Q |
384 |
tgttc |
388 |
Q |
| |
|
||||| |
|
|
| T |
4285777 |
tgttc |
4285773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 4242945 - 4242853
Alignment:
| Q |
18 |
ctttcgggttaattgtatgtaactgggttactcgttatacggaagcaaaatcaaaacgaaaattcaaaatcaagaaaatgagtgaggtttttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4242945 |
ctttcgggttaattgtatgtaactgggttactcgttatacggaagcaaaatcaaaacgaaaattcaaaatcaagaaaatgagtgaggtttttt |
4242853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 4286273 - 4286227
Alignment:
| Q |
49 |
tcgttatacggaagcaaaatcaaaacgaaaattcaaaatcaagaaaa |
95 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4286273 |
tcgttatacggaagcaaaatcaaaatgaaaattcaaaatcaagaaaa |
4286227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University