View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18894_low_7 (Length: 385)
Name: NF18894_low_7
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18894_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 35026283 - 35026650
Alignment:
| Q |
1 |
caagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatggtcttccctttggtgctgaaacatcttca |
100 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35026283 |
caagttacaacatctcaacctaaacccaaatctcatcactttttaccctctcaatgttcctcacattgatggtcttcccgatggtgctgaaacatcttca |
35026382 |
T |
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| Q |
101 |
gatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaactaaacccacaaatagttt |
200 |
Q |
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||||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35026383 |
gatgtacccttttctttagtccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaactaaacccacaaatagttt |
35026482 |
T |
|
| Q |
201 |
tctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaatattggataacaagtccattttcaatatcttatttttg |
300 |
Q |
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| T |
35026483 |
tctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaatattggataacaagtccattttcaatatcttatttttg |
35026582 |
T |
|
| Q |
301 |
gaatggaccaagacatagccaaggaaaaggattaactgtagatgatctcaagaaaccaccttcagggt |
368 |
Q |
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| T |
35026583 |
gaatggaccaagacatagccaaggaaaaggattaactgtagatgatctcaagaaaccaccttcagggt |
35026650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 85 - 264
Target Start/End: Complemental strand, 34998770 - 34998591
Alignment:
| Q |
85 |
tgctgaaacatcttcagatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaacta |
184 |
Q |
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||||||||| |||||||||| || ||| |||||||||||||||||||||||| ||||| ||||| || |||||||||||| |||||| ||||||||| |
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| T |
34998770 |
tgctgaaactacttcagatgtaccctcttctttattccctcttattgctacagccatggaccaaactgagaaacaaattgaatctcttctaaaggaacta |
34998671 |
T |
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| Q |
185 |
aacccacaaatagttttctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaata |
264 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| |
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| T |
34998670 |
aagccacaaatagttttctttgattttcaatattggctaccaaacttgactcaaaaacttggtatcaaaagtcttcaata |
34998591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 35019368 - 35019105
Alignment:
| Q |
1 |
caagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatggtcttccctttggtgctgaaacatcttca |
100 |
Q |
| |
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|||||||||||||||||| ||| | ||||| || || || |||| |||| ||| |||||||| || |||| ||||| | |||||||||| ||||| |
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| T |
35019368 |
caagttacaacatctcaatcttcatccaaatcttattacgtttttccctatcacagttcctcatgttaatggccttcctcataatgctgaaacaacttca |
35019269 |
T |
|
| Q |
101 |
gatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaactaaacccacaaatagttt |
200 |
Q |
| |
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||||| || || |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| | ||||| |||| ||||||||||||| |
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| T |
35019268 |
gatgtgccattttctttattccctcttattgctacagccatggatcaaacagataaacaaattgaacttcttttgaaggagttaaagccacaaatagttt |
35019169 |
T |
|
| Q |
201 |
tctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaata |
264 |
Q |
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|||||||||||||||||||||| || || ||||||||||||||||| || |||||||||||||| |
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| T |
35019168 |
tctttgattttcaatattggctacctaacttgactcaaaaacttggtatcaaaagtcttcaata |
35019105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 85 - 264
Target Start/End: Complemental strand, 35012258 - 35012079
Alignment:
| Q |
85 |
tgctgaaacatcttcagatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaacta |
184 |
Q |
| |
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|||||||||| |||||||||| || || |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| | ||||| || |
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| T |
35012258 |
tgctgaaacaacttcagatgtgccattttctttattccctcttattgctacagccatggatcaaacagataaacaaattgaacttcttttgaaggagtta |
35012159 |
T |
|
| Q |
185 |
aacccacaaatagttttctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaata |
264 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| || |||||||||||||| |
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| T |
35012158 |
aagccacaaatagttttctttgattttcaatattggctacctaacttgactcaaaaacttggtatcaaaagtcttcaata |
35012079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 35033292 - 35033555
Alignment:
| Q |
1 |
caagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatggtcttccctttggtgctgaaacatcttca |
100 |
Q |
| |
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|||||||||| ||||||| ||| | ||||| || || || |||| |||| ||| |||||||| || |||||||||| ||| |||||||||| ||||| |
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| T |
35033292 |
caagttacaatatctcaatctttatccaaatcttattacctttttccctatcacagttcctcatgttaatggtcttcctcttgatgctgaaacaacttca |
35033391 |
T |
|
| Q |
101 |
gatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaactaaacccacaaatagttt |
200 |
Q |
| |
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||||| || || |||| ||||||||||||||||||| |||||||||||||| || | |||||| |||||| || ||| |||| ||||||||||||| |
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| T |
35033392 |
gatgtgcccttttctttagtccctcttattgctacagccatggatcaaacagagaaggatattgaaattcttctcaaagaaataaagccacaaatagttt |
35033491 |
T |
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| Q |
201 |
tctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaata |
264 |
Q |
| |
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||||||| || ||||||||||||||||| |||||| |||| |||| ||| |||||||| ||||| |
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| T |
35033492 |
tctttgacttccaatattggcttccaaagttgactaaaaaccttgacatcaaaagtctgcaata |
35033555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 35036900 - 35036810
Alignment:
| Q |
15 |
tcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatggtcttccctttggtgctgaaacatcttcagatgt |
105 |
Q |
| |
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|||||||| | ||||| |||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |||||||||| |
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| T |
35036900 |
tcaacctttatccaaatctcatcactttttaccctctcaatgttcctcacattcatggtcttccatttggtgctgaaaccacttcagatgt |
35036810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 36288585 - 36288675
Alignment:
| Q |
15 |
tcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatggtcttccctttggtgctgaaacatcttcagatgt |
105 |
Q |
| |
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|||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||| || || |||||||| |||||||| |||||||||| |
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| T |
36288585 |
tcaacctttacccaaaccttatcaccttttaccctctcaatgttcctcacattgaaggcctaccctttggcgctgaaaccacttcagatgt |
36288675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 35009053 - 35009123
Alignment:
| Q |
35 |
atcactttttaccctctcagtgttcctcacattgatggtcttccctttggtgctgaaacatcttcagatgt |
105 |
Q |
| |
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||||||||||||||||||| ||||||||| ||| |||||||||| |||||||||||||| |||||||||| |
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| T |
35009053 |
atcactttttaccctctcaatgttcctcatattcatggtcttccatttggtgctgaaaccacttcagatgt |
35009123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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