View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18894_low_9 (Length: 347)
Name: NF18894_low_9
Description: NF18894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18894_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 12922134 - 12921788
Alignment:
| Q |
1 |
agaattttcaatgaaaacagaatgttcattcatgcatagtctgaagaaagttccatgctttagcttcctttatgtgcttatgtgcatcttaagaggagag |
100 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12922134 |
agaattttcaatgataacagaattttcattcatgcatagtctgaagaaagttccatgctttagcttcctttatgtgcttatgtgcatcttgagaggagag |
12922035 |
T |
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| Q |
101 |
gatatgtgaagtatcatcattatatgcagtataactgcacaactaaacagtgaggtaattcattcagaacaatttgactggacaaagatttacgtgcagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12922034 |
gatatgtgaagtatcatcattatatgcagtataactgcacaactaaacagtgaggtaattcattcagaacaatttgactggacaaagatttacgtgcagc |
12921935 |
T |
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| Q |
201 |
aagatcttattcatttaatgcnnnnnnnnnnnnggtattcagtgtatgttatgtcacttcccaaagaggcaaactctgcgcaatgtctctgtttgcaaca |
300 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12921934 |
aagatcttattcatttaatgcttttttatttttggtattcagtgtatgttatgtcacttcccaaagaggcaaactctgcgcaatgtctctgtttgcaaca |
12921835 |
T |
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| Q |
301 |
tacggtttcttgatatggaaatcagaagcgaagatttttgctatata |
347 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12921834 |
cacggtttcttgatatggaaatcagaagtgaagatttttgctatata |
12921788 |
T |
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