View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18895_high_1 (Length: 549)
Name: NF18895_high_1
Description: NF18895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18895_high_1 |
 | |
|
| [»] scaffold0559 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 40783120 - 40782713
Alignment:
| Q |
1 |
atatgagatgagatgtgaaatccttgtttttgatcgaatttaatttaactaagatattttcgatctaagagtgagca-taaattaaaggaggaaacatga |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40783120 |
atatgagatgagatgtgaaatccttgtttttgatcgaatttaatttaactaagatattttctatctaagagtgagcaataaattaaaggaggaaacatga |
40783021 |
T |
|
| Q |
100 |
tgaggttgtgttgtttgtgagcatgcgcacacatacacatgatacatagattagagacatgaaattgaaaggcaatatagtgaagaaggtggtcacgtga |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40783020 |
tgaggttgtgttgtttgtgagcatgcgcacacataca--tgatacatagattagagacatgaaattgaaaggcaatatagtgaagaaggtggtcacgtga |
40782923 |
T |
|
| Q |
200 |
agatggtcgaccccatcgtccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtttaaatgg |
299 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40782922 |
agatggtcgaccccatcatccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtttaaatgg |
40782823 |
T |
|
| Q |
300 |
gtccctgaagctccctaacacacttccacgacacatgatttgtgttggcccatttgcttcctttggcgctgaaaaattaaaaggaggttaaagaaagaaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40782822 |
gtccctgaagctccctaacacacttccacgacacatgatttgtgttggcccatttgcttcctttggcgctgaaaaattaaaaggatgttaaagaaagaaa |
40782723 |
T |
|
| Q |
400 |
ggaagaagat |
409 |
Q |
| |
|
|||||||||| |
|
|
| T |
40782722 |
ggaagaagat |
40782713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 477 - 535
Target Start/End: Complemental strand, 40782645 - 40782587
Alignment:
| Q |
477 |
taaagggttctcatgtgctatacaatcaagggcttagatctctcacgtgatgaaagaaa |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40782645 |
taaagggttctcatgtgctatacaatcaagggcttagatctctcacgtgatgaaagaaa |
40782587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 193 - 408
Target Start/End: Complemental strand, 10990 - 10773
Alignment:
| Q |
193 |
cacgtgaagatggtcgaccccatcgtccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtt |
292 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10990 |
cacgtgaagatggtcgaccccatcatccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtt |
10891 |
T |
|
| Q |
293 |
taaatgggtccctgaagctccctaacacacttccacgacacatga-tttgtgttggcccatttgcttcctttggcgctgaaaaa--ttaaaaggaggtta |
389 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
10890 |
taaatgggt-cctgaagctccctaacacacttccacgacacatgattttgtgttggcccatttgcttcctttggcgctgaaaaaattaaaaaggatgtta |
10792 |
T |
|
| Q |
390 |
aagaaagaaaggaagaaga |
408 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
10791 |
aagaaagaaaggaagaaga |
10773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 478 - 535
Target Start/End: Complemental strand, 10693 - 10636
Alignment:
| Q |
478 |
aaagggttctcatgtgctatacaatcaagggcttagatctctcacgtgatgaaagaaa |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10693 |
aaagggttctcatgtgctatacaatcaagggcttagatctctcacgtgatgaaagaaa |
10636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 48661237 - 48661108
Alignment:
| Q |
11 |
agatgtgaaatccttgtttttgatcgaatttaatttaactaagatattttcgatc-taa--gagtgagcataaattaaaggaggaaacatgatg--aggt |
105 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| ||||||||| || | | | ||||||||||||||||||||| | |||||| || |
|
|
| T |
48661237 |
agatgtgaaatccttgtttt-gatccaatttaatttaacttagatattttagagcatgagtgagtgagcataaattaaaggatacataatgatgttgtgt |
48661139 |
T |
|
| Q |
106 |
tgtgttgtttgtgagcatgcgcacacataca |
136 |
Q |
| |
|
||| ||||||||||||||| ||||||||||| |
|
|
| T |
48661138 |
tgttttgtttgtgagcatgtgcacacataca |
48661108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University