View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18895_low_2 (Length: 321)
Name: NF18895_low_2
Description: NF18895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18895_low_2 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 5608155 - 5608449
Alignment:
| Q |
18 |
atgtttatatgaacatttgaaccttcctaattatttatgctcatttgaaactttggctggtgacaaaggataagctgtttgatgcaaaagcagggcatgt |
117 |
Q |
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| T |
5608155 |
atgtttatatgaacatttgaaccttcctaattatttatgctcatttgaaactttggctggtgacaaaggataagctgtttgatgcaaaagcagggcgtgt |
5608254 |
T |
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| Q |
118 |
agtaggaaacgttgtactggtttgtactttttgagatatatgcattgccacttaattaagaagactatatgaagattaatccaaataaatgattggggta |
217 |
Q |
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| T |
5608255 |
agtaggaaaggttgtactggtttatactttttgagatatatgcattgccacttaattaagaagactatatgaagattaatccaaat-aatgattggggta |
5608353 |
T |
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| Q |
218 |
taatgagtccaaccaatttgatatctgtgtgaaaggaatagcattgaatcttgagaatgagaatgtcagaattgttgtatacttctttgtgatgat |
313 |
Q |
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| T |
5608354 |
taatgagtccaaccaatttgatatctgtgtgaaaggaatagcattgaatcttgagaatgagaatgtcagaattgttgtatacttctttgcgatgat |
5608449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 5568432 - 5568701
Alignment:
| Q |
18 |
atgtttatatgaacatttgaaccttcctaattatttatgctcatttgaaactttggctggtgacaaaggataagctgtttgatgcaaaagcagggcatgt |
117 |
Q |
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| T |
5568432 |
atgtttatatgaacatttgaaccttcctaattatttatgctcatttgaaactttggctggtgacaaaggataagctgtttgatgcaaaagcagggcatgt |
5568531 |
T |
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| Q |
118 |
agtaggaaacgttgtactggtttgtactttttgagatatatgcattgccacttaattaagaagactatatgaagattaatccaaataaatgattggggta |
217 |
Q |
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| T |
5568532 |
agt---aaaggttgtactggtttgtactttttgagatatatgcattgccacttaattaagaagactatatgaagattaatccaaat-aatgattggggta |
5568627 |
T |
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| Q |
218 |
taatgagtccaaccaatttgatatctgtgtgaaaggaatagcattgaatcttgagaatgagaatgtcagaattg |
291 |
Q |
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| T |
5568628 |
taatgagtccaaccaatttgatatctatgtgaaaggattagcattgaatcttgagaatgagaatgtaagaattg |
5568701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 5549700 - 5549749
Alignment:
| Q |
55 |
tgctcatttgaaactttggctggtgacaaaggataagctgtttgatgcaa |
104 |
Q |
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| T |
5549700 |
tgctcatttgaaactttgacaggtgacaaaggagaagctgttggatgcaa |
5549749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0212 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 16261 - 16210
Alignment:
| Q |
244 |
gtgtgaaaggaatagcattgaatcttgagaatgagaatgtcagaattgttgt |
295 |
Q |
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| T |
16261 |
gtgtgaaaggaatagcgttgaatcttgagaatgagaatgtcggaattgttgt |
16210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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