View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18896_high_1 (Length: 691)

Name: NF18896_high_1
Description: NF18896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18896_high_1
NF18896_high_1
[»] chr6 (2 HSPs)
chr6 (553-685)||(7373782-7373914)
chr6 (506-539)||(35129628-35129661)
[»] chr4 (4 HSPs)
chr4 (387-680)||(48517552-48517841)
chr4 (387-631)||(48514681-48514924)
chr4 (387-592)||(12704760-12704967)
chr4 (585-657)||(12703803-12703875)
[»] chr5 (4 HSPs)
chr5 (387-657)||(37075296-37075564)
chr5 (506-536)||(25215291-25215321)
chr5 (506-536)||(25279442-25279472)
chr5 (573-653)||(37411156-37411237)
[»] chr8 (3 HSPs)
chr8 (387-654)||(33293492-33293760)
chr8 (608-680)||(19488692-19488763)
chr8 (506-539)||(19954272-19954305)
[»] chr3 (4 HSPs)
chr3 (189-287)||(11766589-11766687)
chr3 (254-292)||(10442623-10442661)
chr3 (506-539)||(48432408-48432441)
chr3 (506-539)||(48435890-48435923)
[»] chr2 (2 HSPs)
chr2 (387-492)||(14918366-14918471)
chr2 (506-539)||(14104590-14104623)
[»] scaffold0018 (1 HSPs)
scaffold0018 (506-539)||(171777-171810)
[»] chr1 (3 HSPs)
chr1 (505-550)||(6789660-6789705)
chr1 (506-539)||(2493880-2493913)
chr1 (506-539)||(24159861-24159894)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 5e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 553 - 685
Target Start/End: Original strand, 7373782 - 7373914
Alignment:
Q  553 tgaatgatgcaacaaatttttcttacctcgtcgtccccaagataaaacaaccttttcaaacttgactatgagtactctctgcacaaagagaactcatcaa 652  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7373782 tgaatgatgcaacaaatttttcttacctcgtcgtccccaagataaaacaaccttttcaaacttgactatgagtactctttgcacaaagagaactcatcaa 7373881  T
Q  653 accaaacaccctcaactatatcaatattcttcg 685  Q
    |||||||||||||||||||||||||||| ||||    
T  7373882 accaaacaccctcaactatatcaatattgttcg 7373914  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 539
Target Start/End: Original strand, 35129628 - 35129661
Alignment:
Q  506 gagtcgcagactaggtcgctctctttaagacgtt 539  Q
    ||||||||||||||||||||||||||||||||||    
T  35129628 gagtcgcagactaggtcgctctctttaagacgtt 35129661  T

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Target: chr4 (Bit Score: 108; Significance: 7e-54; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 387 - 680
Target Start/End: Original strand, 48517552 - 48517841
Alignment:
Q  387 tggaacatttcttgaacacttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactctaacacacacaaaataattttgt 486  Q
    |||||||||||||||||||||||||||||| |  | | |||||| |||| |||||||||||  ||| ||||||||| |||||||   |||||||| |  |    
T  48517552 tggaacatttcttgaacacttaaattgttgatgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaacaca---aaaataatatcat 48517648  T
Q  487 tagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtcgt 586  Q
    |||||||| |||    || ||||||| ||||||||||||||||||||||||||| ||| |||||| |||||  ||||||| || |||||| |||||||||    
T  48517649 tagatacaaaattggggctgagtcgcggactaggtcgctctctttaagacgttctgcggctctgcctgaattgtgcaacagatctttcttgcctcgtcgt 48517748  T
Q  587 ccccaagataaaacaaccttttcaaacttgactatgagtactctctgcacaaagagaactcatcaaaccaaacaccctcaactatatcaatatt 680  Q
    ||||| ||||||||| || |||||||||| | ||||| |||||| |||||||||| |||||  |||||| ||||||||||| |||| |||||||    
T  48517749 ccccaggataaaacagccctttcaaacttaagtatgactactctttgcacaaagaaaactctccaaacc-aacaccctcaattataccaatatt 48517841  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 387 - 631
Target Start/End: Original strand, 48514681 - 48514924
Alignment:
Q  387 tggaacatttcttgaacacttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactctaacacacacaaaataattttgt 486  Q
    |||| ||||||||||||||||||||||||| |  | | |||||| |||| |||||||||||  ||| ||||||||| ||||||| | |||||||| | ||    
T  48514681 tggaccatttcttgaacacttaaattgttgttgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaacacaaa-aaaataatatcgt 48514779  T
Q  487 tagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtcgt 586  Q
    | |||||| |||    || ||||||||||||||||||||||||||||||||||||||| |||||| |||||  | ||| | || |||||| |||||||||    
T  48514780 tcgatacaaaattggggctgagtcgcagactaggtcgctctctttaagacgttccgcggctctgcctgaattgtacaatagatctttcttgcctcgtcgt 48514879  T
Q  587 ccccaagataaaacaaccttttcaaacttgactatgagtactctc 631  Q
    ||||| ||| |||||||| ||||||| |||| |||||| ||||||    
T  48514880 ccccaggatgaaacaaccctttcaaatttgagtatgagaactctc 48514924  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 387 - 592
Target Start/End: Complemental strand, 12704967 - 12704760
Alignment:
Q  387 tggaacatttcttgaacactt-aaattgttgctacatacgtcgaatactttaaatcatttctttaaataat-caaactctaacacacacaaaataatttt 484  Q
    ||||||||||||||||||||| |||| |||| | |||  |||||| |||| ||| || ||||  ||| ||| ||||||  ||  |||||||||||||| |    
T  12704967 tggaacatttcttgaacactttaaatagttgttgcatctgtcgaacacttgaaaacaattctgcaaaaaattcaaacttgaaagcacacaaaataattat 12704868  T
Q  485 gttagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtc 584  Q
    |||||||||| |||    || ||||||| ||||||||||||||||||||||| ||  ||| |||||| | |||| |||||||  | |||||| ||||||     
T  12704867 gttagatacaaaattcgggctgagtcgcggactaggtcgctctctttaagaccttttgcggctctgcctcaatggtgcaacatttatttcttgcctcgtt 12704768  T
Q  585 gtccccaa 592  Q
    ||||||||    
T  12704767 gtccccaa 12704760  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 585 - 657
Target Start/End: Complemental strand, 12703875 - 12703803
Alignment:
Q  585 gtccccaagataaaacaaccttttcaaacttgactatgagtactctctgcacaaagagaactcatcaaaccaa 657  Q
    |||||||  ||||||||||| || ||||||| | ||||| |||||||||||||||||||| ||| ||||||||    
T  12703875 gtccccagaataaaacaacccttccaaacttaagtatgaatactctctgcacaaagagaattcaccaaaccaa 12703803  T

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Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 387 - 657
Target Start/End: Original strand, 37075296 - 37075564
Alignment:
Q  387 tggaacatttcttgaacacttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactctaacacacacaaaataattttgt 486  Q
    |||||||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||  ||| ||||||||| ||| ||| |  |||||| |||||    
T  37075296 tggaacatttcttgaacacttaaattgttgctgcatatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaaaacata--aaataactttgt 37075393  T
Q  487 tagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtcgt 586  Q
    |||||||| ||| | | | ||||   ||| || ||||||||||||||||||||| ||| |||||| |||||| ||||||| || ||||||  ||||||||    
T  37075394 tagatacaaaatttgaactgagttatagattatgtcgctctctttaagacgttctgcggctctgcctgaatggtgcaacatatatttcttggctcgtcgt 37075493  T
Q  587 ccccaagataaaacaaccttttcaaacttgactatgagtactctctgcacaaagagaactcatcaaaccaa 657  Q
    | ||| |||||||||  | || ||||||| | |||||||||||| ||||||||||||||||| ||||||||    
T  37075494 ctccaggataaaacattcattacaaacttaagtatgagtactctatgcacaaagagaactcaccaaaccaa 37075564  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 536
Target Start/End: Complemental strand, 25215321 - 25215291
Alignment:
Q  506 gagtcgcagactaggtcgctctctttaagac 536  Q
    |||||||||||||||||||||||||||||||    
T  25215321 gagtcgcagactaggtcgctctctttaagac 25215291  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 536
Target Start/End: Complemental strand, 25279472 - 25279442
Alignment:
Q  506 gagtcgcagactaggtcgctctctttaagac 536  Q
    |||||||||||||||||||||||||||||||    
T  25279472 gagtcgcagactaggtcgctctctttaagac 25279442  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 653
Target Start/End: Complemental strand, 37411237 - 37411156
Alignment:
Q  573 tcttacctcgtcgtccccaagataaaacaaccttttcaaacttgac-tatgagtactctctgcacaaagagaactcatcaaa 653  Q
    ||||||||| ||||| ||| ||||||||| ||||   |||||| |  |||||||||||||| ||||||||||||||| ||||    
T  37411237 tcttacctcatcgtctccaggataaaacagccttccaaaacttaaaatatgagtactctcttcacaaagagaactcaccaaa 37411156  T

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Target: chr8 (Bit Score: 93; Significance: 6e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 387 - 654
Target Start/End: Original strand, 33293492 - 33293760
Alignment:
Q  387 tggaacatttcttgaacacttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactct-aacacacacaaaataattttg 485  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||| |||| |||| ||||||  ||| ||||||||||| |||||||| |||||||||| |    
T  33293492 tggaacatttcttgaacacttaaaatgttgctgcatacatcgaacacttgaaattatttctgcaaaaaatcaaactcttaacacacaaaaaataatttcg 33293591  T
Q  486 ttagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtcg 585  Q
    ||| ||||| ||| |  || ||||||||||||| ||| |||| ||||| | |||||| | |||||| |||||  | ||||| || |||||| ||||||||    
T  33293592 ttaaatacaaaatttgggctgagtcgcagactacgtcactctttttaatatgttccgtggctctgcctgaatagtacaacatatctttcttgcctcgtcg 33293691  T
Q  586 tccccaagataaaacaaccttttcaaacttgactatgagtactctctgcacaaagagaactcatcaaac 654  Q
    || |||  |||||||| |||||  |||||||  ||||||||||| ||||||||||||||| || |||||    
T  33293692 tctccataataaaacagcctttcaaaacttgtgtatgagtactcactgcacaaagagaacccagcaaac 33293760  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 608 - 680
Target Start/End: Complemental strand, 19488763 - 19488692
Alignment:
Q  608 tcaaacttgactatgagtactctctgcacaaagagaactcatcaaaccaaacaccctcaactatatcaatatt 680  Q
    ||||||||||||||||||||| | ||||||| ||||||||| |||| | |||||||||||  |||||||||||    
T  19488763 tcaaacttgactatgagtactatttgcacaacgagaactca-caaaaccaacaccctcaatcatatcaatatt 19488692  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 539
Target Start/End: Original strand, 19954272 - 19954305
Alignment:
Q  506 gagtcgcagactaggtcgctctctttaagacgtt 539  Q
    |||||||||||||| |||||||||||||||||||    
T  19954272 gagtcgcagactagatcgctctctttaagacgtt 19954305  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 11766589 - 11766687
Alignment:
Q  189 aaatgaaactactcaaagcaagctccacgataacggtaaagcacatcatcaaactttgctatacctatttcattcttaattttagttttgacgattttt 287  Q
    ||||||||| ||| ||||||| ||||||||| |||||||| ||||||||  |||| || | | | ||||||||||||| |||||| |||||||||||||    
T  11766589 aaatgaaaccactgaaagcaaactccacgattacggtaaaacacatcattgaactatgttttgcttatttcattcttagttttaggtttgacgattttt 11766687  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 10442661 - 10442623
Alignment:
Q  254 tatttcattcttaattttagttttgacgatttttgtttc 292  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  10442661 tatttcattcttatttttagttttgacgatttctgtttc 10442623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 539
Target Start/End: Original strand, 48432408 - 48432441
Alignment:
Q  506 gagtcgcagactaggtcgctctctttaagacgtt 539  Q
    ||||||| ||||||||||||||||||||||||||    
T  48432408 gagtcgcggactaggtcgctctctttaagacgtt 48432441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 539
Target Start/End: Complemental strand, 48435923 - 48435890
Alignment:
Q  506 gagtcgcagactaggtcgctctctttaagacgtt 539  Q
    ||||||| ||||||||||||||||||||||||||    
T  48435923 gagtcgcggactaggtcgctctctttaagacgtt 48435890  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 387 - 492
Target Start/End: Original strand, 14918366 - 14918471
Alignment:
Q  387 tggaacatttcttgaacac-ttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactctaacacacacaaaataattttg 485  Q
    ||||||||||||||||||| ||||||||||||| |||   ||||| ||||  ||| ||||||  ||| ||||| |||  |||||||| ||||||||||||    
T  14918366 tggaacatttcttgaacactttaaattgttgctgcatctatcgaacacttggaattatttctgcaaaaaatcatacttgaacacaca-aaaataattttg 14918464  T
Q  486 ttagata 492  Q
    |||||||    
T  14918465 ttagata 14918471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 539
Target Start/End: Original strand, 14104590 - 14104623
Alignment:
Q  506 gagtcgcagactaggtcgctctctttaagacgtt 539  Q
    ||||||| ||||||||||||||||||||||||||    
T  14104590 gagtcgcggactaggtcgctctctttaagacgtt 14104623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 539
Target Start/End: Complemental strand, 171810 - 171777
Alignment:
Q  506 gagtcgcagactaggtcgctctctttaagacgtt 539  Q
    ||||||||||||||||||||||||||||||||||    
T  171810 gagtcgcagactaggtcgctctctttaagacgtt 171777  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 550
Target Start/End: Complemental strand, 6789705 - 6789660
Alignment:
Q  505 cgagtcgcagactaggtcgctctctttaagacgttccgcgcctctg 550  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||    
T  6789705 cgagtcgcagactaggttgctctctttaagacgttctgcgactctg 6789660  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 539
Target Start/End: Complemental strand, 2493913 - 2493880
Alignment:
Q  506 gagtcgcagactaggtcgctctctttaagacgtt 539  Q
    |||||||| |||||||||||||||||||||||||    
T  2493913 gagtcgcaaactaggtcgctctctttaagacgtt 2493880  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 539
Target Start/End: Complemental strand, 24159894 - 24159861
Alignment:
Q  506 gagtcgcagactaggtcgctctctttaagacgtt 539  Q
    ||||||| ||||||||||||||||||||||||||    
T  24159894 gagtcgcggactaggtcgctctctttaagacgtt 24159861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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