View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18896_high_10 (Length: 321)
Name: NF18896_high_10
Description: NF18896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18896_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 2935713 - 2936013
Alignment:
| Q |
1 |
tgtgtgttcaagtgttctctagacaatttaccttgaacttgataaaagtttgttatatgttgtttgcattcattggctttgtaagaagtatttgtgttgt |
100 |
Q |
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| T |
2935713 |
tgtgtgttcaagtgttctctagacaatttaccttgaacttgataaaagtttgttatatgttgtttg----tattgactttgtaagaagtattggtgttgt |
2935808 |
T |
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| Q |
101 |
gtgatcaaatataaaactactatgctttgtgttcttgtcttgtcttgattaaaagacaaatatttttgtatgtaagcacttatgcaaagttgaagagaat |
200 |
Q |
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| T |
2935809 |
gtgatcaaatataaaactactatgctttgtgttcttgtcttgtcttgattaaaagacaaatatttttgtatgtaagcacttatgcaaagttgaagagaat |
2935908 |
T |
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| Q |
201 |
atcaaattaaatttgaacaagaactatgattgtcaatgattgctttattataataaaatttggtcttattcattggacactcttcaaacaaatcatattc |
300 |
Q |
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| T |
2935909 |
atcaaattaaatttgaacaagaactatgattgtcaataattgctttattataataaaatttggtcttattcattggacactcttcaaacaaatcatattc |
2936008 |
T |
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| Q |
301 |
catgt |
305 |
Q |
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||||| |
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| T |
2936009 |
catgt |
2936013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 2920815 - 2920902
Alignment:
| Q |
54 |
tatatgttgtttgcattcattggctttgtaagaagtatttgtgttgtgtgatcaaatataaaactactatgctttgtgttcttgtcttg |
142 |
Q |
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| T |
2920815 |
tatatgttgtttgcattcattagctttgtatgaagtatt-gtattgtgtgatcaaatataaaattactatgctttgtgttcatgtcttg |
2920902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 2920916 - 2921030
Alignment:
| Q |
181 |
tatgcaaagttgaagagaatatcaaattaaatttgaacaagaac----tatgattgtcaatgattgctttattataataaaatttggtcttattcattgg |
276 |
Q |
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| T |
2920916 |
tatgcaatgttgaagataatatcaaattaa-tttgaacaagaacaagatatgattgtcaagaattgcattaaaatactaaactt-ggtcgtattcattgg |
2921013 |
T |
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| Q |
277 |
acactcttcaaacaaat |
293 |
Q |
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||||| ||||||||||| |
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| T |
2921014 |
acacttttcaaacaaat |
2921030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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