View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18896_high_12 (Length: 311)
Name: NF18896_high_12
Description: NF18896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18896_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 23957227 - 23956951
Alignment:
| Q |
18 |
cacacaccatgcctgaggcacctagaggctacaaccttgttgaacagaacnnnnnnntcctggacttcattgaggatgttacctcaaacgctgaccaagt |
117 |
Q |
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| T |
23957227 |
cacacaccatgcctgaggcacctagaggctacaaccttgttgaacagaacaaaaaaatcctggacttcattgaggatgttacctcaaacgctgaccaagt |
23957128 |
T |
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| Q |
118 |
tcaacaaaaggttctctcagaaatcctgtctcgcaatgcaaacgttgaatatcttaaaagatatgatctcaatggtcacacagaccgtgacaccttcaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23957127 |
tcaacaaaaggttctctcagaaatcctgtctcgcaatgcaaacgttgaatatcttaaaagatatgatctcaatggtcacacagaccgtgacaccttcaaa |
23957028 |
T |
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| Q |
218 |
aaactcttgcctgttatttcatatgaagatattcaacctgatattgaccgtatctccaatggtgacacctctcctat |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23957027 |
aaactcttgcctgttatttcatatgaagatattcaacctgatattgaccgtatctccaatggtgacacctctcctat |
23956951 |
T |
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