View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18896_high_15 (Length: 236)
Name: NF18896_high_15
Description: NF18896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18896_high_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 33063816 - 33063598
Alignment:
| Q |
16 |
ttactatcacgaatcaagagtcggatgaaaatgatccatacaagttgaagttaaaatgaatatgtgaagatacaacagttgatttcaacttagttggtaa |
115 |
Q |
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| T |
33063816 |
ttactatcacgaatcaagagtcggatgaaaatgaaccagacaagttgaagttaaaatgaatatgtgaagatacaacaattgatttcaacttagttggtaa |
33063717 |
T |
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| Q |
116 |
ataaataataatttctatgtaaatgataaaactttaagaaatacattttatgaggatgaatgcaccttgagacttggaaagtcacaaaatttgtgatata |
215 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
33063716 |
ataaatgataatttctatgtaaatgataaaactt--agaaatacattttatgaggatgaatgcatcttgagacttggaaagtcgcaaaatttgtgatata |
33063619 |
T |
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| Q |
216 |
catgattgaaagtcatttctc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
33063618 |
catgattgaaagtcatttctc |
33063598 |
T |
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