View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18896_high_4 (Length: 460)
Name: NF18896_high_4
Description: NF18896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18896_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 108 - 450
Target Start/End: Complemental strand, 32131509 - 32131167
Alignment:
| Q |
108 |
cagagaaatattaacaggttctagttttcatgaggaattccgtcaggattgatttattgatttgattctttcttggtaagtgatttagatgaatattcat |
207 |
Q |
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| T |
32131509 |
cagagaaatattaacaggttctagttttcatgaggaattccgtcaggattgatttattgatttgattctttcttggtaagtgatttagatgaatattcat |
32131410 |
T |
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| Q |
208 |
tactaactataaacttgccacattatcaactgactataaactttctccatttctacctataaacttgctgtgtcgttaaaccaacactcctctaagcatc |
307 |
Q |
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| T |
32131409 |
tactaactataaacttgccacattatcaactgactataaactttctccatttctacctataaacttgctgtgtcgttaaaccaacactcctctaagcatc |
32131310 |
T |
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| Q |
308 |
tcatcacacttgccacattatcaattaactctcatccacctcaacacatttcttcctttcagtttagactttcatacaaactagcttatttgagctccca |
407 |
Q |
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| T |
32131309 |
tcatcacacttgccacattatcaattaactcttatccacctcaacacatttcttcctttcagtttagactttcatacaaactagcttatttgagctccca |
32131210 |
T |
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| Q |
408 |
acctaaacctgatcaactcctcattggggttggaggacctatg |
450 |
Q |
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| T |
32131209 |
acctaaacctgatcaactcctcattggggttggaggacctatg |
32131167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 32131606 - 32131530
Alignment:
| Q |
1 |
cgatttgttaaggcaactgatgatattcaagaaggatgagttccttccaagtaacctcatcccatggcattgccctt |
77 |
Q |
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| T |
32131606 |
cgatttgttaaggcaactgatgatattcaagaaggatgagttccttccaagtaacctcatcccatggcattgccctt |
32131530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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