View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18896_low_11 (Length: 312)
Name: NF18896_low_11
Description: NF18896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18896_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 37453863 - 37453565
Alignment:
| Q |
1 |
acaaagacgtgacgcgtgggttagtcctagtcatccattttattgacagtgactttatgacttatttaacattccatcagatcttgaaagtgggttgctg |
100 |
Q |
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| T |
37453863 |
acaaagacgtgacgcgtgggttagtcctagtcatccattttattgacagtgactttatgacttatttaacattccatcagatcttgaaagtgggttgctg |
37453764 |
T |
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| Q |
101 |
ggatagtgtgaggtgaacctgaaaatgacagttaatcacttgattgattatggttggagtacaaaacttttctaatttgttggtactaccaaaatatcta |
200 |
Q |
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| T |
37453763 |
ggatagtgtgaggtgaacctgaaaatgacagttaatcacttgattgattatggttggagtacaaaacttttctaatttgttggtactaccaaaatatcta |
37453664 |
T |
|
| Q |
201 |
aatatagttatctcaatttatttattaagttaatgctaagctaagatcttgcctgaatttcaatcttttggagcataatatacatatatatgttattaa |
299 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37453663 |
aatatagttatctcaatttatttaatcagttaatgctaagctaagatcttgcctgaatttcaatcttttggagcataatatacatatatatgttattaa |
37453565 |
T |
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