View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18896_low_13 (Length: 294)

Name: NF18896_low_13
Description: NF18896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18896_low_13
NF18896_low_13
[»] scaffold0011 (1 HSPs)
scaffold0011 (108-280)||(15551-15723)
[»] chr3 (5 HSPs)
chr3 (112-280)||(17581878-17582046)
chr3 (110-276)||(271634-271800)
chr3 (2-34)||(2584015-2584047)
chr3 (2-34)||(8113569-8113601)
chr3 (2-34)||(10922315-10922347)
[»] chr2 (5 HSPs)
chr2 (97-280)||(16382956-16383139)
chr2 (1-34)||(41778951-41778984)
chr2 (2-34)||(21558813-21558845)
chr2 (2-34)||(28771604-28771636)
chr2 (2-34)||(39068715-39068747)
[»] chr8 (4 HSPs)
chr8 (1-31)||(24696016-24696046)
chr8 (5-34)||(35102674-35102703)
chr8 (2-34)||(42208476-42208508)
chr8 (1-29)||(43240355-43240383)
[»] chr6 (5 HSPs)
chr6 (1-31)||(2692236-2692266)
chr6 (4-34)||(8809330-8809360)
chr6 (2-30)||(6864144-6864172)
chr6 (2-34)||(8637444-8637476)
chr6 (2-34)||(31971551-31971583)
[»] chr5 (3 HSPs)
chr5 (1-31)||(17046355-17046385)
chr5 (1-34)||(20927660-20927693)
chr5 (1-34)||(22394056-22394089)
[»] chr4 (5 HSPs)
chr4 (1-34)||(19854586-19854619)
chr4 (143-204)||(34818664-34818725)
chr4 (2-34)||(19908714-19908746)
chr4 (2-34)||(25978339-25978371)
chr4 (2-34)||(56551599-56551631)
[»] chr1 (4 HSPs)
chr1 (1-34)||(1794617-1794650)
chr1 (1-29)||(4302473-4302501)
chr1 (2-34)||(6000150-6000182)
chr1 (143-207)||(32721839-32721903)
[»] chr7 (1 HSPs)
chr7 (1-29)||(39801727-39801755)


Alignment Details
Target: scaffold0011 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 108 - 280
Target Start/End: Complemental strand, 15723 - 15551
Alignment:
Q  108 aaattttgttgacataccgtaaaagcagtcctagtctgactatcatatatgtctttcttgctaaggttgtgaaacatttgtgggaattgaacaaaagcaa 207  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15723 aaattttggtgacataccgtaaaagcagtcctagtctgactatcatatatgtctttcttgctaaggttgtgaaacatttgagggaattgaacaaaagcaa 15624  T
Q  208 catctttagaggtttcaggatcaagaaaaaagcacatagattgtttggctgatgatgcatcattacaattcat 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15623 catctttagaggtttcaggatcaagaaaaaagcacatagattgtttggctgatgatgcatcattacaattcat 15551  T

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Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 112 - 280
Target Start/End: Original strand, 17581878 - 17582046
Alignment:
Q  112 tttgttgacataccgtaaaagcagtcctagtctgactatcatatatgtctttcttgctaaggttgtgaaacatttgtgggaattgaacaaaagcaacatc 211  Q
    |||| |||||||||||||||||| |||||| ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||| |||    
T  17581878 tttggtgacataccgtaaaagcattcctagcctgactatcatatatatctttcttgctgaggttgtgaaacatttgagggaattggacaaaagcaagatc 17581977  T
Q  212 tttagaggtttcaggatcaagaaaaaagcacatagattgtttggctgatgatgcatcattacaattcat 280  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  17581978 tttggaggtttcaggatcaagaaaaaagcacatggattgtttggctgatgatgaatcattacaattcat 17582046  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 110 - 276
Target Start/End: Complemental strand, 271800 - 271634
Alignment:
Q  110 attttgttgacataccgtaaaagcagtcctagtctgactatcatatatgtctttcttgctaaggttgtgaaacatttgtgggaattgaacaaaagcaaca 209  Q
    ||||||||||  |||| |||||||||||||||  ||| ||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||| |    
T  271800 attttgttgatttaccttaaaagcagtcctagattgattatcatagatgtcttttttgctaaggttgtgaaacatttgagggaattgaacaaatgcaata 271701  T
Q  210 tctttagaggtttcaggatcaagaaaaaagcacatagattgtttggctgatgatgcatcattacaat 276  Q
    | |||||||||||| ||||||||||| || ||||| | |||||||||||| ||||  ||||||||||    
T  271700 tatttagaggtttctggatcaagaaagaaacacatggcttgtttggctgaagatgggtcattacaat 271634  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 2584047 - 2584015
Alignment:
Q  2 ggacaatgcataatatatgcaagatccgaggtt 34  Q
    ||||||||||| |||||||||||||||||||||    
T  2584047 ggacaatgcattatatatgcaagatccgaggtt 2584015  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 8113601 - 8113569
Alignment:
Q  2 ggacaatgcataatatatgcaagatccgaggtt 34  Q
    |||||||||||||||||||||||||||| ||||    
T  8113601 ggacaatgcataatatatgcaagatccgcggtt 8113569  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 10922347 - 10922315
Alignment:
Q  2 ggacaatgcataatatatgcaagatccgaggtt 34  Q
    |||||||||||||||||||||||||||| ||||    
T  10922347 ggacaatgcataatatatgcaagatccggggtt 10922315  T

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Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 97 - 280
Target Start/End: Original strand, 16382956 - 16383139
Alignment:
Q  97 taaagagcttcaaattttgttgacataccgtaaaagcagtcctagtctgactatcatatatgtctttcttgctaaggttgtgaaacatttgtgggaattg 196  Q
    |||||||||| |||||||| |||||||||||||||||| |||||| || ||||| |||||||||||||||||||| ||||||||||||||| ||||||||    
T  16382956 taaagagcttgaaattttggtgacataccgtaaaagcattcctagcctcactattatatatgtctttcttgctaatgttgtgaaacatttgagggaattg 16383055  T
Q  197 aacaaaagcaacatctttagaggtttcaggatcaagaaaaaagcacatagattgtttggctgatgatgcatcattacaattcat 280  Q
     |||||||||| ||||| |||  ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  16383056 gacaaaagcaagatcttgagatattttaggatcaagaaaaaagcacatggattgtttggctgatgatgaatcattacaattcat 16383139  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41778984 - 41778951
Alignment:
Q  1 tggacaatgcataatatatgcaagatccgaggtt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  41778984 tggacaatgcataatatatgcaaggtccgaggtt 41778951  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 21558845 - 21558813
Alignment:
Q  2 ggacaatgcataatatatgcaagatccgaggtt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  21558845 ggacaatgcataatatatgcaaggtccgaggtt 21558813  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 28771604 - 28771636
Alignment:
Q  2 ggacaatgcataatatatgcaagatccgaggtt 34  Q
    |||||||||||||||||||||||||||| ||||    
T  28771604 ggacaatgcataatatatgcaagatccgcggtt 28771636  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 39068747 - 39068715
Alignment:
Q  2 ggacaatgcataatatatgcaagatccgaggtt 34  Q
    |||||||||||||||||||||||||||| ||||    
T  39068747 ggacaatgcataatatatgcaagatccggggtt 39068715  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 24696046 - 24696016
Alignment:
Q  1 tggacaatgcataatatatgcaagatccgag 31  Q
    |||||||||||||||||||||||||||||||    
T  24696046 tggacaatgcataatatatgcaagatccgag 24696016  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 35102703 - 35102674
Alignment:
Q  5 caatgcataatatatgcaagatccgaggtt 34  Q
    ||||||||||||||||||||||||||||||    
T  35102703 caatgcataatatatgcaagatccgaggtt 35102674  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 42208508 - 42208476
Alignment:
Q  2 ggacaatgcataatatatgcaagatccgaggtt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  42208508 ggacaatgcataatatatgcaaggtccgaggtt 42208476  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 43240355 - 43240383
Alignment:
Q  1 tggacaatgcataatatatgcaagatccg 29  Q
    |||||||||||||||||||||||||||||    
T  43240355 tggacaatgcataatatatgcaagatccg 43240383  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 2692236 - 2692266
Alignment:
Q  1 tggacaatgcataatatatgcaagatccgag 31  Q
    |||||||||||||||||||||||||||||||    
T  2692236 tggacaatgcataatatatgcaagatccgag 2692266  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 8809330 - 8809360
Alignment:
Q  4 acaatgcataatatatgcaagatccgaggtt 34  Q
    |||||||||||||||||||||||||||||||    
T  8809330 acaatgcataatatatgcaagatccgaggtt 8809360  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 6864172 - 6864144
Alignment:
Q  2 ggacaatgcataatatatgcaagatccga 30  Q
    |||||||||||||||||||||||||||||    
T  6864172 ggacaatgcataatatatgcaagatccga 6864144  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 8637476 - 8637444
Alignment:
Q  2 ggacaatgcataatatatgcaagatccgaggtt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  8637476 ggacaatgcataatatatgcaaggtccgaggtt 8637444  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 31971551 - 31971583
Alignment:
Q  2 ggacaatgcataatatatgcaagatccgaggtt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  31971551 ggacaatgcataatatatgcaaggtccgaggtt 31971583  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 17046355 - 17046385
Alignment:
Q  1 tggacaatgcataatatatgcaagatccgag 31  Q
    |||||||||||||||||||||||||||||||    
T  17046355 tggacaatgcataatatatgcaagatccgag 17046385  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20927660 - 20927693
Alignment:
Q  1 tggacaatgcataatatatgcaagatccgaggtt 34  Q
    |||||||| |||||||||||||||||||||||||    
T  20927660 tggacaatacataatatatgcaagatccgaggtt 20927693  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 22394056 - 22394089
Alignment:
Q  1 tggacaatgcataatatatgcaagatccgaggtt 34  Q
    |||||||||||||||||||| |||||||||||||    
T  22394056 tggacaatgcataatatatgtaagatccgaggtt 22394089  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 19854586 - 19854619
Alignment:
Q  1 tggacaatgcataatatatgcaagatccgaggtt 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  19854586 tggacaatgcataatatatgcaagatccggggtt 19854619  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 34818664 - 34818725
Alignment:
Q  143 ctgactatcatatatgtctttcttgctaaggttgtgaaacatttgtgggaattgaacaaaag 204  Q
    |||||| ||||| |||||||||||||||| |||||||||  | || || |||||||||||||    
T  34818664 ctgactgtcatagatgtctttcttgctaatgttgtgaaatttctgaggaaattgaacaaaag 34818725  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 19908714 - 19908746
Alignment:
Q  2 ggacaatgcataatatatgcaagatccgaggtt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  19908714 ggacaatgcataatatatgcaaggtccgaggtt 19908746  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 25978339 - 25978371
Alignment:
Q  2 ggacaatgcataatatatgcaagatccgaggtt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  25978339 ggacaatgcataatatatgcaaggtccgaggtt 25978371  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 56551631 - 56551599
Alignment:
Q  2 ggacaatgcataatatatgcaagatccgaggtt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  56551631 ggacaatgcataatatatgcaaggtccgaggtt 56551599  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1794617 - 1794650
Alignment:
Q  1 tggacaatgcataatatatgcaagatccgaggtt 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  1794617 tggacaatgcataatatatgcaagatccggggtt 1794650  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 4302473 - 4302501
Alignment:
Q  1 tggacaatgcataatatatgcaagatccg 29  Q
    |||||||||||||||||||||||||||||    
T  4302473 tggacaatgcataatatatgcaagatccg 4302501  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 6000182 - 6000150
Alignment:
Q  2 ggacaatgcataatatatgcaagatccgaggtt 34  Q
    ||||||||||||||||||||||| |||||||||    
T  6000182 ggacaatgcataatatatgcaaggtccgaggtt 6000150  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 32721839 - 32721903
Alignment:
Q  143 ctgactatcatatatgtctttcttgctaaggttgtgaaacatttgtgggaattgaacaaaagcaa 207  Q
    |||||| ||||||||||| |||||||| |  ||||||||  | || |||||||||||||||||||    
T  32721839 ctgactgtcatatatgtcattcttgcttatattgtgaaatttctgagggaattgaacaaaagcaa 32721903  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 39801727 - 39801755
Alignment:
Q  1 tggacaatgcataatatatgcaagatccg 29  Q
    |||||||||||||||||||||||||||||    
T  39801727 tggacaatgcataatatatgcaagatccg 39801755  T

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