View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18896_low_18 (Length: 212)

Name: NF18896_low_18
Description: NF18896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18896_low_18
NF18896_low_18
[»] chr7 (18 HSPs)
chr7 (14-193)||(3932578-3932757)
chr7 (14-193)||(3934817-3934996)
chr7 (18-193)||(19786630-19786805)
chr7 (18-193)||(19788936-19789111)
chr7 (14-193)||(8733639-8733815)
chr7 (14-193)||(36464365-36464544)
chr7 (41-193)||(3052094-3052246)
chr7 (14-193)||(8414633-8414811)
chr7 (14-153)||(42678752-42678899)
chr7 (103-153)||(19094042-19094092)
chr7 (26-65)||(16497078-16497117)
chr7 (18-65)||(16535260-16535307)
chr7 (18-65)||(16630355-16630402)
chr7 (151-193)||(8731317-8731359)
chr7 (151-193)||(28610382-28610424)
chr7 (14-46)||(3052003-3052035)
chr7 (14-46)||(8414839-8414871)
chr7 (14-46)||(36464572-36464604)
[»] chr5 (12 HSPs)
chr5 (14-193)||(37207735-37207914)
chr5 (14-193)||(23164382-23164561)
chr5 (14-193)||(11850049-11850228)
chr5 (14-193)||(11852307-11852486)
chr5 (14-183)||(22600775-22600944)
chr5 (84-193)||(37215396-37215505)
chr5 (14-193)||(1779350-1779546)
chr5 (14-190)||(1779587-1779780)
chr5 (14-46)||(23164589-23164621)
chr5 (14-46)||(37207675-37207707)
chr5 (73-153)||(15469006-15469086)
chr5 (14-46)||(22600715-22600747)
[»] chr1 (12 HSPs)
chr1 (14-193)||(29833217-29833396)
chr1 (14-193)||(734720-734899)
chr1 (14-193)||(2403969-2404148)
chr1 (14-193)||(8933682-8933878)
chr1 (135-193)||(29833856-29833914)
chr1 (25-73)||(2416660-2416708)
chr1 (74-137)||(18353733-18353796)
chr1 (151-193)||(10909108-10909150)
chr1 (148-193)||(2410091-2410136)
chr1 (14-46)||(734927-734959)
chr1 (151-193)||(10911352-10911394)
chr1 (14-46)||(29833424-29833456)
[»] chr4 (10 HSPs)
chr4 (14-193)||(42468581-42468760)
chr4 (14-193)||(42470910-42471089)
chr4 (14-193)||(50855903-50856082)
chr4 (14-193)||(45166934-45167113)
chr4 (14-193)||(45162042-45162221)
chr4 (25-193)||(8739266-8739435)
chr4 (78-193)||(19429219-19429334)
chr4 (87-153)||(43179575-43179641)
chr4 (151-193)||(13774151-13774193)
chr4 (151-193)||(13776449-13776491)
[»] chr8 (9 HSPs)
chr8 (14-193)||(4876855-4877034)
chr8 (14-193)||(4879183-4879362)
chr8 (14-193)||(36379609-36379788)
chr8 (14-193)||(24519296-24519475)
chr8 (14-193)||(36377324-36377503)
chr8 (14-193)||(21268272-21268450)
chr8 (14-46)||(36379816-36379848)
chr8 (14-46)||(21268478-21268510)
chr8 (14-46)||(36377531-36377563)
[»] chr2 (10 HSPs)
chr2 (14-193)||(31486746-31486925)
chr2 (14-191)||(31489030-31489207)
chr2 (26-193)||(29801850-29802022)
chr2 (75-191)||(34576735-34576860)
chr2 (14-193)||(23859844-23860045)
chr2 (151-193)||(42275697-42275739)
chr2 (14-46)||(31486686-31486718)
chr2 (14-46)||(31488970-31489002)
chr2 (95-153)||(8995229-8995287)
chr2 (151-193)||(42277923-42277965)
[»] scaffold0599 (1 HSPs)
scaffold0599 (114-193)||(1579-1658)
[»] scaffold0050 (2 HSPs)
scaffold0050 (72-193)||(29261-29381)
scaffold0050 (72-193)||(31574-31696)
[»] chr3 (5 HSPs)
chr3 (72-193)||(18966253-18966374)
chr3 (76-151)||(1701104-1701179)
chr3 (151-193)||(4530835-4530877)
chr3 (157-193)||(4533138-4533174)
chr3 (94-150)||(8535522-8535578)
[»] chr6 (1 HSPs)
chr6 (14-190)||(21199152-21199347)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 3932578 - 3932757
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3932578 aatatggaagactctagaatactagggaataataaggaagctactagatactactaaataagcactagggaagtcttaacttttctagatccttctaggc 3932677  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3932678 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctaga 3932757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 3934817 - 3934996
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3934817 aatatggaagactctagaatactagggaataataaggaagctactagatactactaaataagcactagggaagtcttaacttttctagatccttctaggc 3934916  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3934917 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctaga 3934996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 19786630 - 19786805
Alignment:
Q  18 tggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggcttat 117  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19786630 tggaagtctctagaatattagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggcttat 19786729  T
Q  118 gtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19786730 gtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctaga 19786805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 19788936 - 19789111
Alignment:
Q  18 tggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggcttat 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19788936 tggaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggcttat 19789035  T
Q  118 gtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  19789036 gtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttactaga 19789111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 8733815 - 8733639
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  8733815 aatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactaggg---tcttaacttttctagatccttctaggc 8733719  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  8733718 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaaaggagagccttcctaga 8733639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 36464544 - 36464365
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      
T  36464544 aatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttgacttttctagatccttctagtt 36464445  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  36464444 ttatgtactagagtatccatatctccagacttttctttgtttctagatatttctagtttataatggagagccttcctaga 36464365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 41 - 193
Target Start/End: Original strand, 3052094 - 3052246
Alignment:
Q  41 aataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtctcta 140  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||| ||||||| ||||||    
T  3052094 aataataaggaagctactagacactactaaataagcattagggaagtcttaacttttctagatccttctagttttatgtactagaatatccatatctcta 3052193  T
Q  141 gacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3052194 gacttttctttgtttctagatatttctagtttgtaatggagagccttcctaga 3052246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 8414811 - 8414633
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||      
T  8414811 aatatagaagtctctagaatactagggaataataaggaaactactagacactactaaataagcactagggaagtcttgacttttctagat-cttctagtt 8414713  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||| ||||| | ||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  8414712 ttatatactaaaatatccatatctctagacttttctttgtttctagatttttctagtttgtaatggagagccttcctaga 8414633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 42678899 - 42678752
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagaca--ctactaaat------aagcactagggaagtcttaacttttctagatcc 105  Q
    |||||||||| ||||| ||||||| |||||||||||||||||||||||||  |||||||||      |||||||||| || ||||||  |||||||||||    
T  42678899 aatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaagcactaggaaaatcttaatgtttctagatcc 42678800  T
Q  106 ttctaggcttatgtactagagtatccatgtctctagacttttctttgt 153  Q
    |||||| | ||||  ||||||||||||||| ||||| | |||||||||    
T  42678799 ttctagtcatatgacctagagtatccatgtttctaggcctttctttgt 42678752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 19094092 - 19094042
Alignment:
Q  103 tccttctaggcttatgtactagagtatccatgtctctagacttttctttgt 153  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  19094092 tccttctagacttataaactagagtatccatgtctctagacttttctttgt 19094042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 16497117 - 16497078
Alignment:
Q  26 tctagaatactagggaataataaggaagctactagacact 65  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  16497117 tctagaatactatggaataataaggaagctactagacact 16497078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 16535307 - 16535260
Alignment:
Q  18 tggaagactctagaatactagggaataataaggaagctactagacact 65  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  16535307 tggaagtctctagaatactatggaataataaagaagctactagacact 16535260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 16630355 - 16630402
Alignment:
Q  18 tggaagactctagaatactagggaataataaggaagctactagacact 65  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  16630355 tggaagtctctagaatactatggaataataaagaagctactagacact 16630402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 8731359 - 8731317
Alignment:
Q  151 tgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||| || |||||| ||||||||||||||    
T  8731359 tgtttctagatatttctaatttgtaatgtagagccttcctaga 8731317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 28610424 - 28610382
Alignment:
Q  151 tgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    ||||||||||||||||||||| |||||| |||||||| |||||    
T  28610424 tgtttctagatatttctagtttgtaatgtagagcctttctaga 28610382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 3052003 - 3052035
Alignment:
Q  14 aatatggaagactctagaatactagggaataat 46  Q
    ||||||||||||||||||||||||| |||||||    
T  3052003 aatatggaagactctagaatactagagaataat 3052035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 8414871 - 8414839
Alignment:
Q  14 aatatggaagactctagaatactagggaataat 46  Q
    ||||||||||||||||||||||||| |||||||    
T  8414871 aatatggaagactctagaatactagagaataat 8414839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 36464604 - 36464572
Alignment:
Q  14 aatatggaagactctagaatactagggaataat 46  Q
    ||||||||||||||||||||||||| |||||||    
T  36464604 aatatggaagactctagaatactagagaataat 36464572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 37207735 - 37207914
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37207735 aatatagaagtctgtagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 37207834  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37207835 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 37207914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 23164561 - 23164382
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23164561 aatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataaacactagggaagtcttaacttttctagatccttctaggc 23164462  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23164461 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 23164382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 11850228 - 11850049
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11850228 aatatagaagtctctaaaatactagggaataataagaaagctactagacactactaaataagcactagggaagtcttaaattttctagatccttctaggc 11850129  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11850128 ttatgtacaagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 11850049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 11852486 - 11852307
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||    
T  11852486 aatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcataacttttctaggaccttctaggc 11852387  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11852386 ttatgtactagagtatccatatctctagacttttatttgtttctagatatttctagttggtaatggagagccttcctaga 11852307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 22600775 - 22600944
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22600775 aatatagaagtctctagaatactatggaataataagaaagctacttgacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 22600874  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagag 183  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22600875 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagag 22600944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 84 - 193
Target Start/End: Original strand, 37215396 - 37215505
Alignment:
Q  84 aagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagag 183  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  37215396 aagtcttaacttttctagatccttctaggcttatatactagagtatccatgtctctaaacttttctttgtttctagatatttctagttggtaatgaagag 37215495  T
Q  184 ccttcctaga 193  Q
    ||||||||||    
T  37215496 ccttcctaga 37215505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 1779546 - 1779350
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacact--actaaataa------gcactagggaagtcttaacttttctagatcc 105  Q
    ||||| |||| ||||| ||||||| |||||||||||||||||||||||||||  |||||||||      |||||||  || ||||||  |||||||||||    
T  1779546 aatatagaagtctctaaaatactatggaataataaggaagctactagacactccactaaataaaataaagcactagaaaaatcttaatgtttctagatcc 1779447  T
Q  106 ttctaggcttatgtactagagtatccatgtctctagacttttctt---------tgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||| | |||| |||||||||||||||| ||||| | ||||||         |||||||||||| |||||||| |||||| ||||||||||||||    
T  1779446 ttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagagccttcctaga 1779350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 1779780 - 1779587
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagaca--ctact-----aaataa-gcactagggaagtcttaacttttctagatcc 105  Q
    |||||||||| |||||||||||||  |||||||   ||||||||||||||  |||||     |||||| || |||||||| ||||||  |||||||||||    
T  1779780 aatatggaagtctctagaatactaaagaataatgtcgaagctactagacattctactggataaaataaagcgctagggaaatcttaatgtttctagatcc 1779681  T
Q  106 ttctaggcttatgtactagagtatccatgtctctagacttttctt---------tgtttctagatatttctagttggtaatggagagccttcct 190  Q
    |||||| | |||| |||||| ||||| | ||||||| | |||| |         ||||||||||||||||||||| |||||| | |||||||||    
T  1779680 ttctagtcatatgaactagaatatccctatctctaggcctttccttgtaatcaatgtttctagatatttctagtttgtaatgtaaagccttcct 1779587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 23164621 - 23164589
Alignment:
Q  14 aatatggaagactctagaatactagggaataat 46  Q
    |||||||||||||||||||||||||||||||||    
T  23164621 aatatggaagactctagaatactagggaataat 23164589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 37207675 - 37207707
Alignment:
Q  14 aatatggaagactctagaatactagggaataat 46  Q
    |||||||||||||||||||||||||||||||||    
T  37207675 aatatggaagactctagaatactagggaataat 37207707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 15469006 - 15469086
Alignment:
Q  73 aagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgt 153  Q
    |||||||||| || | ||||||||||||||||| ||||| | |||| | ||| ||||| || |||||| ||||||| ||||    
T  15469006 aagcactaggaaaatattaacttttctagatccatctagtcatatgaattagtgtatctatatctctaaacttttccttgt 15469086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 22600715 - 22600747
Alignment:
Q  14 aatatggaagactctagaatactagggaataat 46  Q
    ||||||||||||||||||||| |||||||||||    
T  22600715 aatatggaagactctagaatattagggaataat 22600747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 29833396 - 29833217
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29833396 aatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 29833297  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29833296 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctaga 29833217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 734899 - 734720
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  734899 aatatagaagtctctagaatactagggaataacaaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggt 734800  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  734799 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctaga 734720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 2404148 - 2403969
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2404148 aatatagaagtctctagaatactagggaataataaggaagctactagatactactaaataagcactagggaagtcttaacttttctagatccttctaggc 2404049  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  2404048 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagtcttcctaga 2403969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 8933878 - 8933682
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacact--actaaataa------gcactagggaagtcttaacttttctagatcc 105  Q
    |||||||||| ||||| ||||||| |||||||||||||||||| ||||||||  |||||||||      |||||||| || ||||||  |||||||||||    
T  8933878 aatatggaagtctctaaaatactatggaataataaggaagctattagacactctactaaataaaataaagcactaggaaaatcttaatgtttctagatcc 8933779  T
Q  106 ttctaggcttatgtactagagtatccatgtctctagacttttctt---------tgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||| | |||| |||||||||||||||| ||||| | ||||||         |||||||||||| |||||||| |||||| ||| ||||||||||    
T  8933778 ttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataattctagtttgtaatgtagaaccttcctaga 8933682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 29833856 - 29833914
Alignment:
Q  135 tctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29833856 tctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 29833914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 2416708 - 2416660
Alignment:
Q  25 ctctagaatactagggaataataaggaagctactagacactactaaata 73  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2416708 ctctagaatactagggaataataaggaagctactagatactactaaata 2416660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 18353733 - 18353796
Alignment:
Q  74 agcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtct 137  Q
    ||||||||| || ||||| ||||||||||||||||||| | |||| ||||||||||||||||||    
T  18353733 agcactaggaaaatcttatcttttctagatccttctagtcatatgaactagagtatccatgtct 18353796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 10909108 - 10909150
Alignment:
Q  151 tgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  10909108 tgtttctagatatttctagtttgtaatgtagagccttcctaga 10909150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 2410136 - 2410091
Alignment:
Q  148 ctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    ||||||||||||||||| ||| || |||||||||||||||||||||    
T  2410136 ctttgtttctagatattgctaatttgtaatggagagccttcctaga 2410091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 734959 - 734927
Alignment:
Q  14 aatatggaagactctagaatactagggaataat 46  Q
    |||||||||||||||||||||||||||||||||    
T  734959 aatatggaagactctagaatactagggaataat 734927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 10911352 - 10911394
Alignment:
Q  151 tgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||    
T  10911352 tgtttctagatatttctagtttgtaatgtagacccttcctaga 10911394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 29833456 - 29833424
Alignment:
Q  14 aatatggaagactctagaatactagggaataat 46  Q
    ||||||||||||||||||||||||| |||||||    
T  29833456 aatatggaagactctagaatactagagaataat 29833424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 42468760 - 42468581
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42468760 aatatggaagactctagaatactggggaataataaggaagctactagatactactaaataagcactagggaagtcttaacttttctagatccttctaggc 42468661  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42468660 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctaga 42468581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 42471089 - 42470910
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42471089 aatatggaagactctagaatacttgggaataataaggaagctactagatactactaaataagcactagggaagtcttaacttttctagatccttctaggc 42470990  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42470989 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctaga 42470910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 50856082 - 50855903
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50856082 aatatggaagtctctagaatactatggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 50855983  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50855982 ttatgtaccagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 50855903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 45166934 - 45167113
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  45166934 aatatagaagtctttagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtctttacttttctagatccttctaggt 45167033  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  45167034 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagtcttcctaga 45167113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 45162042 - 45162221
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  45162042 aatatagaagtctttagaatactagggaataataagaaagctactagacactactaaataagcactagggaagtctttacttttctagatccttctaggt 45162141  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  45162142 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagtcttcctaga 45162221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 8739266 - 8739435
Alignment:
Q  25 ctctagaatactagggaataataaggaagctactagacactactaaa--taagcactagggaagtcttaacttttctagatccttctaggcttatgtact 122  Q
    |||||||||||||  |||||||||||||||||||| |||| ||||||  || ||||||||||| ||||||  ||||||||||||||||| | |||| |||    
T  8739266 ctctagaatactaatgaataataaggaagctactatacac-actaaaattatgcactagggaaatcttaatgtttctagatccttctagtcatatgaact 8739364  T
Q  123 agagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||| |||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  8739365 agagcatccatatctctagatttttctttgtttctagatatttctagtttgtaatgtagagccttcctaga 8739435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 19429334 - 19429219
Alignment:
Q  78 ctagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaat 177  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  19429334 ctagggaagtcttgacttttctagatccttctagttttatgtactagagtattcatatctctagacttttctttgtttatagatatttctagtttgtaat 19429235  T
Q  178 ggagagccttcctaga 193  Q
    ||||||||| ||||||    
T  19429234 ggagagcctacctaga 19429219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 43179575 - 43179641
Alignment:
Q  87 tcttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgt 153  Q
    ||||||||||| | ||||||||||| | |||| ||||||||||||||||||||| ||||||||||||    
T  43179575 tcttaacttttttggatccttctagtcatatgaactagagtatccatgtctctatacttttctttgt 43179641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 13774151 - 13774193
Alignment:
Q  151 tgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  13774151 tgtttctagatatttctagtttgtaatgtagagccttcctaga 13774193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 13776449 - 13776491
Alignment:
Q  151 tgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  13776449 tgtttctagatatttctagtttgtaatgcagagccttcctaga 13776491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 4876855 - 4877034
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4876855 aatatggaagactctagaatactggggaataataaggaagctactagaaactactaaataagcactagggaagtcttaacttttctagatccttctaggc 4876954  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4876955 ttatgtactatagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctaga 4877034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 4879183 - 4879362
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4879183 aatatggaagactctagaatactggggaataataaggaagctactagaaactactaaataagcactagggaagtcttaacttttctagatccttctaggc 4879282  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4879283 ttatgtactatagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctaga 4879362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 36379788 - 36379609
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36379788 aatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 36379689  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  36379688 ttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatggagagccttcctaga 36379609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 24519475 - 24519296
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24519475 aatatggaagactctagaatactggggaataataaggaagctaccagatactactaaataagcactagggaagtcttaacttttctagatccttctaggc 24519376  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  24519375 ttatgtacaaaagtatccatatctctagacttttctttgtttctagatatttctagtttataatggagagccttcctaga 24519296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 36377503 - 36377324
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36377503 aatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 36377404  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| |||||  ||||||||||||||  ||||||||||| || |||||||||||||||||||||    
T  36377403 ttatgtactagagtatccatatctctgaacttttctttgttttcagatatttctactttgtaatggagagccttcctaga 36377324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 21268450 - 21268272
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||      
T  21268450 aatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataaa-actagggaagtcttgacttttctagatccttctagtt 21268352  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21268351 ttatgtactaaagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctaga 21268272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 36379848 - 36379816
Alignment:
Q  14 aatatggaagactctagaatactagggaataat 46  Q
    |||||||||||||||||||||||||||||||||    
T  36379848 aatatggaagactctagaatactagggaataat 36379816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 21268510 - 21268478
Alignment:
Q  14 aatatggaagactctagaatactagggaataat 46  Q
    ||||||||||||||||||||||||| |||||||    
T  21268510 aatatggaagactctagaatactagagaataat 21268478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 36377563 - 36377531
Alignment:
Q  14 aatatggaagactctagaatactagggaataat 46  Q
    |||||||||||||||||||||||| ||||||||    
T  36377563 aatatggaagactctagaatactaaggaataat 36377531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 31486746 - 31486925
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31486746 aatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 31486845  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  31486846 ttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatggagagccttcctaga 31486925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 31489030 - 31489207
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttaacttttctagatccttctaggc 113  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  31489030 aatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcactagggaagtcttagcttttctagatccttctaagc 31489129  T
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttccta 191  Q
    |||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  31489130 ttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatggagagccttccta 31489207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 29801850 - 29802022
Alignment:
Q  26 tctagaatactagggaataataaggaa----gctactagacactactaaa--taagcactagggaagtcttaacttttctagatccttctaggcttatgt 119  Q
    ||||||||||||  |||||||||||||    ||||||||||||| |||||  |||||||| |  || ||||||  |||||| |||||||||| | ||||     
T  29801850 tctagaatactaaagaataataaggaatctagctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatga 29801948  T
Q  120 actagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||| || |||||| ||||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||||||    
T  29801949 actatagcatccatatctctagacttttctttgtttgtagatatttctagtttgtaatggggagtcttcctaga 29802022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 34576860 - 34576735
Alignment:
Q  75 gcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctt---------tgtttctagatattt 165  Q
    ||||||| ||| ||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||||||         |||||||||||||||    
T  34576860 gcactagagaaatcttaacttttctagatccttctagtcatatgaactagagtattcatgtctctagacttttctttgtaatcaatgtttctagatattt 34576761  T
Q  166 ctagttggtaatggagagccttccta 191  Q
    |||||| |||||| ||||||||||||    
T  34576760 ctagtttgtaatgtagagccttccta 34576735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 23859844 - 23860045
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagaca--ctactaaataag-----------cactagggaagtcttaacttttcta 100  Q
    ||||||| || ||||||||||||| | ||||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| ||||||||    
T  23859844 aatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttcta 23859943  T
Q  101 gatccttctaggcttatgtactagagtatccatgtctctagacttttctttg---------tttctagatatttctagttggtaatggagagccttccta 191  Q
    ||||||||||| |||||| |||||||||| ||||| ||||| | ||||||||         |||||||||| |||||||| |||||| ||||||||||||    
T  23859944 gatccttctagtcttatgaactagagtatgcatgtttctaggcctttctttgtaatcaatatttctagataattctagtttgtaatgtagagccttccta 23860043  T
Q  192 ga 193  Q
    ||    
T  23860044 ga 23860045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 42275739 - 42275697
Alignment:
Q  151 tgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  42275739 tgtttctagatatttctagtttgtaatgtagagccttcctaga 42275697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 31486686 - 31486718
Alignment:
Q  14 aatatggaagactctagaatactagggaataat 46  Q
    |||||||||||||||||||||||||||||||||    
T  31486686 aatatggaagactctagaatactagggaataat 31486718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 31488970 - 31489002
Alignment:
Q  14 aatatggaagactctagaatactagggaataat 46  Q
    |||||||||||||||||||||||||||||||||    
T  31488970 aatatggaagactctagaatactagggaataat 31489002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 8995287 - 8995229
Alignment:
Q  95 tttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgt 153  Q
    ||||||||||||||||| | |||| |||||||||||||||  ||||| | |||||||||    
T  8995287 tttctagatccttctagtcatatgaactagagtatccatgcttctaggcctttctttgt 8995229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 42277965 - 42277923
Alignment:
Q  151 tgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    ||||||||||||||||||||| |||||| |||| |||||||||    
T  42277965 tgtttctagatatttctagtttgtaatgtagagtcttcctaga 42277923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 1579 - 1658
Alignment:
Q  114 ttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1579 ttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctaga 1658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 29261 - 29381
Alignment:
Q  72 taagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagtt 171  Q
    |||||||||||||| ||||||  ||||||||||||||||| | |||||||||||  |||||| |||||||||||||| |||||||||||||||| |||||    
T  29261 taagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatctctagacttttc-ttgtttctagatatttttagtt 29359  T
Q  172 ggtaatggagagccttcctaga 193  Q
     ||||||||||| |||||||||    
T  29360 tgtaatggagagtcttcctaga 29381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 31574 - 31696
Alignment:
Q  72 taagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgt--ctctagacttttctttgtttctagatatttctag 169  Q
    |||||||||||||| ||||||  ||||||||||||||||| | |||||||||||  |||||| |  ||||||||||||||| |||| |||||||||||||    
T  31574 taagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatatctctagacttttctt-gtttttagatatttctag 31672  T
Q  170 ttggtaatggagagccttcctaga 193  Q
    || |||||||||||||||||||||    
T  31673 tttgtaatggagagccttcctaga 31696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 18966374 - 18966253
Alignment:
Q  72 taagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagtt 171  Q
    ||||||||||| || ||||||  ||||||||||||||||| | || |||||||||||||||| ||||| |||||||||| |||||||||||||||||||     
T  18966374 taagcactaggaaaatcttaatgtttctagatccttctagtcatacgtactagagtatccatatctcttgacttttcttggtttctagatatttctagtg 18966275  T
Q  172 ggtaatggagagccttcctaga 193  Q
     || |||||| | |||||||||    
T  18966274 tgtcatggagtgtcttcctaga 18966253  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 1701104 - 1701179
Alignment:
Q  76 cactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttcttt 151  Q
    |||||||||| ||||||||||||||||||||||||| | |||| | |||| ||||||| | ||||| |||||||||    
T  1701104 cactagggaaatcttaacttttctagatccttctagtcatatgaattagattatccatatttctaggcttttcttt 1701179  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 4530835 - 4530877
Alignment:
Q  151 tgtttctagatatttctagttggtaatggagagccttcctaga 193  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  4530835 tgtttctagatatttctagtttgtaatgtagagccttcctaga 4530877  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 4533138 - 4533174
Alignment:
Q  157 tagatatttctagttggtaatggagagccttcctaga 193  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  4533138 tagatatttctagtttgtaatgtagagccttcctaga 4533174  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 8535522 - 8535578
Alignment:
Q  94 ttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctt 150  Q
    |||| ||||||||||||| | |||  |||| ||||||||| ||||||||||||||||    
T  8535522 ttttttagatccttctagtcatataaactaaagtatccatatctctagacttttctt 8535578  T

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Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 21199152 - 21199347
Alignment:
Q  14 aatatggaagactctagaatactagggaataataaggaagctactagaca--ctactaaat------aagcactagggaagtcttaacttttctagatcc 105  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||| |||  |||||||||      |||||||||  || ||||||  |||||||||||    
T  21199152 aatatggaagtctctagaatactatggaataataaggaagctactatacactctactaaataaaataaagcactagttaaatcttaatgtttctagatcc 21199251  T
Q  106 ttctaggcttatgtactagagtatcc--atgtctctagacttttctt---------tgtttctagatatttctagttggtaatggagagccttcct 190  Q
    |||||| | |||| ||| ||||||||  |||||||||| | |||| |         ||||||||||||||||||||| |||||| | |||||||||    
T  21199252 ttctagtcatatgaactggagtatccatatgtctctaggcctttcattgtaatcaatgtttctagatatttctagtttgtaatgtacagccttcct 21199347  T

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