View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18896_low_2 (Length: 588)
Name: NF18896_low_2
Description: NF18896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18896_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 572
Target Start/End: Original strand, 34176403 - 34176970
Alignment:
| Q |
8 |
gaacagagatttgtcagcaaagtaccaagccaactgcagaaatgaagagagtaaaaacagagatctgtcattgaaagagtaaagtgctgccatgccagct |
107 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34176403 |
gaacagagatctgtcagcaaagtaccaagccaagtgcagaaatgaagagagtaaaaacagagatctgtcattgaaagagtaaagtgctgcca-----gct |
34176497 |
T |
|
| Q |
108 |
gcacgaacagaacagagtcaaatactgcgacttaatcaaaagtcttcaaatgttggaaagtaagagagagaaacgaacaaactcagaaaaatccaaaaca |
207 |
Q |
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|||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34176498 |
gcacgaacagaacagaatcagaaactgcgacttaatcaaaagtcttcaaatgttggaaagtaagagagagaaacgaacaaactcaaaaaaatccaaaaca |
34176597 |
T |
|
| Q |
208 |
cagacctgaactgaac-----tgaaccctatttctctgattttttcacaaacaaacacacttctggcctttctctgtttctgtctctatgttttgcagta |
302 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34176598 |
cagacctgaactgaaccgaactgaaccctatttctctgaatttttcacaaacaaacacacttctggcctttctctgtttctgtctctatgttttgcagta |
34176697 |
T |
|
| Q |
303 |
caagtcacaatctttgacacttgtctttattgggtcaatgaatatcatctctatttcttagactttgaaattcatcaagctagnnnnnnnngtttcttca |
402 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
34176698 |
caagtcacaatctttgacacttgtctttattgtgtcaatgaatatcatctctatttcatagactttgaaattcatcaagctag-tttttttgtttcttca |
34176796 |
T |
|
| Q |
403 |
ttgttaccatc----ttagcatcagaaaatgcaatcggatgggtccgaatccgagacccacatcacccatcagcgggttcagtctcagtctctttcttct |
498 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34176797 |
ttgttaccatcttaattagcatcacaaaatgcaatcggatgggtccgaatccgagacccacatcacccatcagcgggttcagtctcagtctctttcttct |
34176896 |
T |
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| Q |
499 |
tcagatacaagaggaaaacatagaatacatgctgagcttaaaaggttggaacaagaaacaaggtacttagaggt |
572 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34176897 |
tcagatacaagaggaaaacatagaatacatgctgagcttaaaaggttggaacaagaaacaaggtacttagaggt |
34176970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 475 - 572
Target Start/End: Original strand, 34147500 - 34147600
Alignment:
| Q |
475 |
gttcagtctcagtctctttc---ttcttcagatacaagaggaaaacatagaatacatgctgagcttaaaaggttggaacaagaaacaaggtacttagagg |
571 |
Q |
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||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
34147500 |
gttcagtctcagtctttttcaacttcttcagatacaagagggaaacataggatacatgctgaacttaaacggttggaacaagaaacaaggtacctagagg |
34147599 |
T |
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| Q |
572 |
t |
572 |
Q |
| |
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| |
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| T |
34147600 |
t |
34147600 |
T |
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