View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18896_low_3 (Length: 536)
Name: NF18896_low_3
Description: NF18896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18896_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 3 - 536
Target Start/End: Original strand, 33356568 - 33357101
Alignment:
| Q |
3 |
tatccccattagtccctgacctcttaaattttttagatcaaagacttgctatagttttcccaatcattcaagccttcaaaaacacaataacatatgaccc |
102 |
Q |
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| T |
33356568 |
tatccccattagtccctgacctcttaaattttttagatcaaagacttgctatagttttcccaatcattcaagccttcaaaaacacaataacatctgaccc |
33356667 |
T |
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| Q |
103 |
attaggaataaccttaacatgggttggtccaaatatatgcaactacaaaggcttctactgcgacaacccgccggataatctctcggccaccaccgtcgcc |
202 |
Q |
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| T |
33356668 |
attaggaataaccttaacatgggttggtccaaatatatgcaactacaaaggcttctactgcgacaacccgccggataatctctcggccaccaccgtcgcc |
33356767 |
T |
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| Q |
203 |
tccatagatttcaacggcttccaactctccgccccttctcttgacgatttcatcgatcaactccccgacttagctcttttccatgcaaactccaacaatt |
302 |
Q |
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| T |
33356768 |
tccatagatttcaacggcttccaactctccgccccttctcttgacgatttcatcgatcaactccccgacttagctcttttccatgcaaactccaacaatt |
33356867 |
T |
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| Q |
303 |
tctcaggttccatttcaccaaaaatagcatcactcaaatacctatacgaacttgatcttagtaacaatcttctctcaggaacatttccatcttcgatcct |
402 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33356868 |
tctcaggtaccatttcaccaaaaatagcatcactcaaatacctatacgaacttgatcttagtaacaatcttctctcaggaacatttccatcttcgatcct |
33356967 |
T |
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| Q |
403 |
aaacatgccgacactttcatttttagacattaggtacaacctcttcactggaacagtacctcaacaaatcttcatacaagaattgagtgcaattttcctc |
502 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33356968 |
aaacatgccaacactttcatttttagacattaggtacaacctcttcactggaacagtacctcaacaaatcttcataaaagaattgagtgcaattttcctc |
33357067 |
T |
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| Q |
503 |
aacaacaacaactttcttctaacacttcccaaca |
536 |
Q |
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| T |
33357068 |
aacaacaacaactttcttctaacacttcccaaca |
33357101 |
T |
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