View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18896_low_6 (Length: 430)
Name: NF18896_low_6
Description: NF18896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18896_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 1232160 - 1232425
Alignment:
| Q |
17 |
ataggtacttatatatgatctaatggtatataggtgcatgcatgaaattgtaccaacatactactattaacacaccttattcttaggcacatctcatgtc |
116 |
Q |
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| T |
1232160 |
ataggtacttatatatgatctaatggtatataggtgcatgcatgaaattgtaccaacatactactattaacacaccttattcttaggcacatctcatgtc |
1232259 |
T |
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| Q |
117 |
aattttactaattagagtttgtccatgtgattaggacccgtattaaattcatctaattaatataaaaactactaatgtgttagaac-nnnnnnnggtact |
215 |
Q |
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| T |
1232260 |
aattttactaattagagtttgtccatgtgattaagacccgtattaaattcatctaattaatataaaaactactaatgtgttagaacaaaaaaaaggtact |
1232359 |
T |
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| Q |
216 |
agtggtatgttgaaataaatattccgaagtgtgagcacaaacattaatttggaaggaaaatagttt |
281 |
Q |
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| T |
1232360 |
agtggtatgttgaaataaatattccaaagtgtgagcacaaacattaatttggaaggaaaatagttt |
1232425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 310 - 412
Target Start/End: Original strand, 1232454 - 1232556
Alignment:
| Q |
310 |
tgtcattttcatatgcatttggcgtatcattcctccccattttcgtggataaatgtatatggctttacatatttggatttggaagcatttataggtctca |
409 |
Q |
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| T |
1232454 |
tgtcattttcatatgcatttggcgtatcattcctccccattttcgtggataaatgtatatggctttacatatttggatttggaagcatttataggtctca |
1232553 |
T |
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| Q |
410 |
tgt |
412 |
Q |
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| T |
1232554 |
tgt |
1232556 |
T |
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