View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18896_low_7 (Length: 425)
Name: NF18896_low_7
Description: NF18896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18896_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 32 - 410
Target Start/End: Complemental strand, 40004150 - 40003772
Alignment:
| Q |
32 |
tacataaaaattgtaacaagtgatgatgataataataataatttgaattcacattcacgaaatcaggtagtccttggtcttaaccatcatatcatcaaat |
131 |
Q |
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| T |
40004150 |
tacataaaaattgtaacaagtgatgatgataataataataatttgaattcacattcacgaaatcaggtagcccttggtcttaaccatcatatcatcaaat |
40004051 |
T |
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| Q |
132 |
taagattaaaagactcatgtcaactatgaattattaattattttgttcatatatttgatagatcagatcacttcactatgtcaaattcgtgagtcttcaa |
231 |
Q |
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| T |
40004050 |
taagattaaaagactcatgtcaactatgaattattaattattttgttcatatatttgatagatcagatcacttcactatgtcaaattcgtgagtcttcaa |
40003951 |
T |
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| Q |
232 |
taacaaagaatctactaaaaccatactagcacaatgtacaacttccaactatccaatcaatattttcttaatgacagtaattaatgtagatttcattact |
331 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40003950 |
taacaaagaatctactaaaatcatactagcacaatgtacaacttccaactatccaatcaatattttcttaatgaccgtaattaatgtagatttcattact |
40003851 |
T |
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| Q |
332 |
ttatagtatgtggattacatttcattccaaaaagattaagtgacccacgtgaatttcaatttcctatatggtgagacat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40003850 |
ttatagtatgtggattacatttcattccaaaaagattaagtgacccacgtgaatttcaatttcctatatggtgagacat |
40003772 |
T |
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