View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18896_low_8 (Length: 367)
Name: NF18896_low_8
Description: NF18896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18896_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 4238872 - 4238534
Alignment:
| Q |
13 |
tttttattattatatcacggttttaattagttgaatattcaatagatcatactattgtcatgcaagtattattctgtacttaaacttaatttgattgata |
112 |
Q |
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| T |
4238872 |
ttttttttattatatcacggttttaattagttgaatattcaatagatcatactagagtcatgcaagtattattccgtacttaaacttaatttgattgata |
4238773 |
T |
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| Q |
113 |
tttgaattatatctggttacatatatagtta----acatgaaaacatgttggtgcagtcactttgcaatgcttgtggaatcaggcagagaaaggcaagaa |
208 |
Q |
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||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4238772 |
tttcaattatgtctggttacatatatagttagttaacatgaaaacatgttggtgcagtcactttgcaatgcttgtggaatcaggcagagaaaggcaagaa |
4238673 |
T |
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| Q |
209 |
gggccatggcagaagctgcaaatggtttggctacatctcctaaaactaaagtgcttaagataaaaaagcctacacaattcaagactaagaacaaggcttc |
308 |
Q |
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| T |
4238672 |
gggccatggcagaagctgcaaatggtttggctacatctcctaaaactaaagtgcttaagataaaaaagcctacacaattcaagactaagaacaaggcttc |
4238573 |
T |
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| Q |
309 |
tactagtacctcttcaacttcaactacttctgctggctc |
347 |
Q |
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| T |
4238572 |
tacaagtacctcttcaacttcaactacttctgctggctc |
4238534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 19921039 - 19920922
Alignment:
| Q |
10 |
taatttttattattatatcacggttttaattagttgaatattcaatagatcatactattgtcatgcaagtattattctgtacttaaacttaatttgattg |
109 |
Q |
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| T |
19921039 |
taatttttaatattatatcacggttttaattagttgaatattcaatagatcacactagagtcatgcaagtattattccat-cttaaacttaatttgat-- |
19920943 |
T |
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| Q |
110 |
atatttgaattatatctggtta |
131 |
Q |
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| T |
19920942 |
-tatttgaattatatctagtta |
19920922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 277
Target Start/End: Complemental strand, 19916113 - 19915996
Alignment:
| Q |
154 |
atgttggtgcagtcactttgcaatgcttgtggaatcaggcagagaaaggcaagaagggccatggcagaagctgcaaatggtttggctacatctcctaaaa |
253 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||| |||||| |
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| T |
19916113 |
atgttggtgccgtcactttgcaatggttgtggaatcaggcagagaaaggcaagacgggccatg------gctgccaatggattggctacatccactaaaa |
19916020 |
T |
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| Q |
254 |
ctaaagtgcttaagataaaaaagc |
277 |
Q |
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| T |
19916019 |
ccaaagtgcttaagataaataagc |
19915996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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