View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18896_low_9 (Length: 357)
Name: NF18896_low_9
Description: NF18896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18896_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 40 - 340
Target Start/End: Original strand, 14811761 - 14812062
Alignment:
| Q |
40 |
atcatctttatatcccttgctctacaagaaaaaatcactatccttttttaaaatatttgacttcaagttcaagccgttattagcaaggaacttcatttct |
139 |
Q |
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| T |
14811761 |
atcatctttatatcccttgctctacaagaaaaaatcactatcctttttaaaaatatttgacttcaagttcaagccgttattagcaaggaacttca-ttct |
14811859 |
T |
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| Q |
140 |
ttcattctcgaagcccgaaggtgagaagaaacctcccccgcgtgaatagtttgaacacacaaaacgtgtgaatctattc--aaaaaaggaaaatcccnnn |
237 |
Q |
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| T |
14811860 |
ttcattctcgaagcccgaaggtgagaagaaacctcccccgcgtgaatagtttgaacacacaaaacgtgtgaatctattcaaaaaaaaggaaaatcccctt |
14811959 |
T |
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| Q |
238 |
nnnnncactagaagaccaaatgaaaaatcaacggtgacccatatttgaatagccacgtggcatctcaccttacacatatataaatactgaacaaccttca |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14811960 |
tttttcactagaagaccaaatgaaaaatcaacggtgacccatatttgaatagccacgtggcatctcaccttacacatatataaatactgaacaaccttca |
14812059 |
T |
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| Q |
338 |
ttt |
340 |
Q |
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| T |
14812060 |
ttt |
14812062 |
T |
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