View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18897_high_15 (Length: 365)
Name: NF18897_high_15
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 136 - 349
Target Start/End: Complemental strand, 21227559 - 21227346
Alignment:
| Q |
136 |
cctctttctaacctagcacttatgcacaagcttctaaatatgatcattggctacgccatagacactgcactacaagctcttcaattaaacagcatttgag |
235 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
21227559 |
cctctttctaacctagcacttatgcacaagattctaaatatgatcattggctaggccatagacactgaactacaagctcttcaattaaacaccatttgag |
21227460 |
T |
|
| Q |
236 |
tgcttacttaagtcaatctatgtctgctctgctgcacatcgagttcttcgttacataaaaaatgcaccaggacaaggtttattccttcctactaaatgta |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21227459 |
tgcttacttaagtcaatctatgtctgctctgctgcacattgagttcttcgttacataaaaaatgcaccaggacaaggtttattccttcctactaaatgta |
21227360 |
T |
|
| Q |
336 |
tcaaaggtagtagt |
349 |
Q |
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|||||||||||||| |
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| T |
21227359 |
tcaaaggtagtagt |
21227346 |
T |
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