View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18897_high_2 (Length: 798)
Name: NF18897_high_2
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 703; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 1 - 780
Target Start/End: Original strand, 394326 - 395105
Alignment:
| Q |
1 |
cgtaaaacaataatgggttcttcagaaaacttttaaaaatcaaattttttatattggagtgtttctgtttaatgcatttttattcaaaaacgttggtggg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
394326 |
cgtaaaacaataatgggttcttgagaaaacttttaaaaatcaaattttttatattggggtgtttctgtttaatgcatttttattcaaaaacgttggtggg |
394425 |
T |
|
| Q |
101 |
ttttgattattcttcatgaacaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgcgaatgaagtttcttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
394426 |
ttttgattattcttcatgaacaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaatgaagtttcttg |
394525 |
T |
|
| Q |
201 |
atgttggtttctatttttaacttttgtgggattgaaactttctgaatttgaagacnnnnnnnaatttgggaatttctaaatttggatcacattatgtatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
394526 |
atgttggtttctatttttaacttttgtgggattgaaactttctgaatttgaagactttttttaatttgggaatttctaaatttggatcacattatgtatt |
394625 |
T |
|
| Q |
301 |
gttgaatgtgtctgaaattggtctcttgaatatgatttctttggtttgtcttttgaatttcattatctgaattgaatattgaatgcaacaataggtgatt |
400 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
394626 |
tttgactgtgtctgaaattggtctcttgaatatgatttctttggtttgtcttttgaatttcattatctgaattgaatattgaatgcaacaataggtgatt |
394725 |
T |
|
| Q |
401 |
gagaatttgagattatgttattttagaactttttaatgattatttgatatggtaattcattgtgttgagttgattatttctgaattttttgaatgattat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
394726 |
gagaatttgagattatgttattttagaactttttaatgattatttgatatggtaattcattgtgttgagttgattatttctgaattttttgaatgattat |
394825 |
T |
|
| Q |
501 |
tacattttggtaatttactgtattgtgttggctttttaggtttgagattatgctatttcagaacttttttgaatgattattagatattggtaaataacta |
600 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
394826 |
tacattttggtaatttactgtattgagttggctttttaggtttgatattatgctatttcagaacttttttgaatgattattagatattggtaattgacta |
394925 |
T |
|
| Q |
601 |
tgttttgttgaatttttaggtgtgtttagatatatctgccatggactctcctatgactccagatgaaactatatcagaggttcagaattcagtttctgag |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
394926 |
tgttttgttgaatttttaggtgtgtttagatatatctgtcatggactctcctatgactgcagttgaaactatatcagaggttcagaattcagtttctgag |
395025 |
T |
|
| Q |
701 |
gtaccaatacgccacagccttcctataacatcagggattccccgttcttcgcggcctcccttatatagaaataatcaagg |
780 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
395026 |
gtaccgatacgccacagccttcctataacatcagggattccccgttcttcgcggcctcctttatatagaaataatcaagg |
395105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 394304 - 394374
Alignment:
| Q |
93 |
ttggtgggttttgattattcttcat-gaacaatcatgggttctagagaaaagttgtaaaaatcaaattttt |
162 |
Q |
| |
|
||||||||||||| ||||||||| | |||||| ||||||||| ||||||| || |||||||||||||||| |
|
|
| T |
394304 |
ttggtgggttttgtttattcttcgtaaaacaataatgggttcttgagaaaacttttaaaaatcaaattttt |
394374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 352
Target Start/End: Original strand, 19764877 - 19765230
Alignment:
| Q |
3 |
taaaacaataatgggttcttcagaaaacttttaaaaatcaaatttt-ttatattggagtgtttctgtttaatgcatttttattcaaaaacgttggtgggt |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19764877 |
taaaacaataatgggttcttgagaaaacttgtaaaaatcaattttttttatattggggtgtttctgtttaatgcatttttattcaaaaacgttggtgggt |
19764976 |
T |
|
| Q |
102 |
tttgattattcttcatgaacaatcatgggttctagagaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgcgaatgaagtttcttga |
201 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19764977 |
tttgattattcttcataaacaatcataggttctagaaaaaagttgtaaaaatcaaatttttatactatgttgatgatgccttgtgaatgaagtttcttga |
19765076 |
T |
|
| Q |
202 |
tgttggtttctatttttaacttttgtgggattgaaactttctgaatttgaagacnnnnnnnaatttgggaatttctaaatttg-----gatcacattatg |
296 |
Q |
| |
|
| || |||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| | ||||||||||| |
|
|
| T |
19765077 |
t-tttgtttctattttt-tcttttgtggaattgaaactttctgaatttgaagactttttttaatttgggattttctaaattggatcataatcacattatg |
19765174 |
T |
|
| Q |
297 |
tattgttgaatgtgtctgaaattggtctcttgaatatgatttctttggtttgtctt |
352 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19765175 |
tattgttgattgtgtctgaaattggtctcttgaatacgatttctttggtttgtctt |
19765230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 19764853 - 19764923
Alignment:
| Q |
93 |
ttggtgggttttgattattcttcat-gaacaatcatgggttctagagaaaagttgtaaaaatcaaattttt |
162 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
19764853 |
ttggtgggttttgattattcttcataaaacaataatgggttcttgagaaaacttgtaaaaatcaatttttt |
19764923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University