View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18897_high_21 (Length: 266)
Name: NF18897_high_21
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_high_21 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 33416239 - 33416076
Alignment:
| Q |
20 |
acctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctgtgtttggagttgtcatggcaatcatggttgcaattgcagtcatcttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416239 |
acctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctctgtttggagttgtcatggcaatcatggttgcaattgcagtcatcttt |
33416140 |
T |
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| Q |
120 |
gcatgagagacttaggaagctttatattgttattaatacagaagtttgtgttaacctcttggca |
183 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416139 |
gcatgagagacttaggaagttttatattgttattaatacagaagtttgtgttaacctcttggca |
33416076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 33410390 - 33410251
Alignment:
| Q |
20 |
acctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctgtgtttggagttgtcatggcaatcatggttgcaattgcagtcatcttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410390 |
acctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctctgtttggagttgtcatggcaatcatggttgcaattgcagtcatcttt |
33410291 |
T |
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| Q |
120 |
gcatgagagacttaggaagctttatattgttattaataca |
159 |
Q |
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| T |
33410290 |
gcatgagagacttaggaagctttatattgttattaataca |
33410251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 33424292 - 33424153
Alignment:
| Q |
20 |
acctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctgtgtttggagttgtcatggcaatcatggttgcaattgcagtcatcttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424292 |
acctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctctgtttggagttgtcatggcaatcatggttgcaattgcagtcatcttt |
33424193 |
T |
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| Q |
120 |
gcatgagagacttaggaagctttatattgttattaataca |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33424192 |
gcatgagagacttaggaagctttatattgttattaataca |
33424153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 33428298 - 33428456
Alignment:
| Q |
21 |
cctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctgtgtttggagttgtcatggcaatcatggttgcaattgcagtcatctttg |
120 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33428298 |
cctgctccttctcttccaccttcttctgatgctcattctgttgtttcatctgtgtttggagttgtcatggcaaccatggttgcaattgcagtcatctttg |
33428397 |
T |
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| Q |
121 |
catgagagacttaggaagctttatattgttattaatacagaagtttgtgttaacctcttggca |
183 |
Q |
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||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
33428398 |
cat----gacttaggaagctttatattgtttttaatacaagagtttgtgttaacctcttggca |
33428456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 33436444 - 33436374
Alignment:
| Q |
20 |
acctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctgtgtttggagttgtcatgg |
90 |
Q |
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|||||||||||| || || || |||||| ||||||||||| |||| |||||| |||||||||||||||||| |
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| T |
33436444 |
acctgctccttcccctcctccatcttctaatgctcactctattgtatcatctatgtttggagttgtcatgg |
33436374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 5355 - 5403
Alignment:
| Q |
42 |
tcttctgatgctcactctgttgtttcatctgtgtttggagttgtcatgg |
90 |
Q |
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|||||| ||||||||||| |||| |||||| |||||||||| ||||||| |
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| T |
5355 |
tcttctaatgctcactctattgtatcatctatgtttggagtcgtcatgg |
5403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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