View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18897_high_22 (Length: 253)
Name: NF18897_high_22
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 36915312 - 36915077
Alignment:
| Q |
14 |
aaaattgcaccaaccatgctttaaaatgttttgtccacaaaaattgcgccaacttgtaaatttaattttgccaattttttctgttcagcgccaaaatgct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36915312 |
aaaattgcaccaaccatgctttaaaatgttttgtccacaaaaatcgcgccaacttgtaaatttaattttgccaattttttctgttcagcgccaaaatgct |
36915213 |
T |
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| Q |
114 |
tttcattcttaatctttataaatagaccagtttagtaggagtattaaacacattaattctatatcataaaatggctatgagagaaatagatttgaatgtt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36915212 |
tttcattcttaatctttataaatagaccagtttagtaggagtattaaacacatcaattctatatcataaaatggctatgagagaaatagatttgaatgtt |
36915113 |
T |
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| Q |
214 |
actcctacgatagaagaatttgatgataacatcaat |
249 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
36915112 |
actcctacgatagaaaaatttgatgataacatcaat |
36915077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 11168626 - 11168390
Alignment:
| Q |
14 |
aaaattgcaccaaccatgctttaaaatgttttgtccacaaaaattgcgccaacttgtaaatttaattttgccaatttttt-ctgttcagcgccaaaatgc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11168626 |
aaaattgcaccaaccatgctttaaaatgttttgtccacaaaaattgcgccaacttgtaaatttaattttgccaatttttttctgttcagcgccaaaatgc |
11168527 |
T |
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| Q |
113 |
ttttcattcttaatctttataaatagaccagtttagtaggagtattaaacacattaattctatatcataaaatggctatgagagaaatagatttgaatgt |
212 |
Q |
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| T |
11168526 |
ttttcattgttaatctttataaatagaccagtttagtaggagtattaaacacatcaattctatatcataaaatgactatgagagaaatagatttgaatgt |
11168427 |
T |
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| Q |
213 |
tactcctacgatagaagaatttgatgataacatcaat |
249 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
11168426 |
tactcctacgatagaaaaatttgatgataacatcaat |
11168390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 15566856 - 15566663
Alignment:
| Q |
14 |
aaaattgcaccaaccatgctttaaaatgttttgtccacaaaaattgcgccaacttgtaaatttaattttgccaattttttctgttcagcgccaaaatgct |
113 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15566856 |
aaaattgcaccaaccatgctttaaaatgttttgtccacaaaaattgcgccaacttgtaaatttaattttgccaattttttctgttcagcgccaaaatgct |
15566757 |
T |
|
| Q |
114 |
tttcattcttaatctttataaatagaccagtttagtaggagtattaaacacattaattctatatcataaaatggctatgagagaaatagatttg |
207 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15566756 |
tttcgttcttaatctttataaatagaccagtttaataggagtattaaacacatcaattctatatcataaaatggctatgagagaaatagatttg |
15566663 |
T |
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