View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18897_high_25 (Length: 226)

Name: NF18897_high_25
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18897_high_25
NF18897_high_25
[»] chr7 (1 HSPs)
chr7 (1-226)||(45675945-45676170)
[»] chr1 (3 HSPs)
chr1 (85-202)||(37962857-37962974)
chr1 (129-202)||(51044460-51044533)
chr1 (129-188)||(16127399-16127458)
[»] chr4 (2 HSPs)
chr4 (67-185)||(5690640-5690758)
chr4 (108-188)||(43560520-43560600)
[»] chr8 (7 HSPs)
chr8 (136-201)||(5849863-5849928)
chr8 (136-201)||(5921232-5921297)
chr8 (136-201)||(5949124-5949189)
chr8 (136-193)||(5960389-5960446)
chr8 (136-201)||(5984652-5984717)
chr8 (139-201)||(5843124-5843186)
chr8 (136-201)||(5887260-5887325)
[»] chr3 (2 HSPs)
chr3 (129-202)||(34626693-34626766)
chr3 (129-188)||(44674042-44674101)
[»] chr5 (2 HSPs)
chr5 (141-191)||(2590846-2590896)
chr5 (130-200)||(12551966-12552036)
[»] scaffold0251 (1 HSPs)
scaffold0251 (144-192)||(9869-9917)
[»] scaffold0008 (1 HSPs)
scaffold0008 (144-191)||(262048-262095)
[»] chr2 (2 HSPs)
chr2 (130-188)||(28205964-28206022)
chr2 (136-196)||(42789002-42789062)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 45675945 - 45676170
Alignment:
Q  1 atgacttaattaaaagccaaatctaaatgcaacacttatcagttccttaattattacaattattggtacctgttgcctaggagtgcatgaagttcaatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45675945 atgacttaattaaaagccaaatctaaatgcaacacttatcaattccttaattattacaattattggtacctgttgcctaggagtgcatgaagttcaatta 45676044  T
Q  101 tggaattctcttcttgctctgagaatgctcctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676045 tggaattctcttcttgctctgagaatgctcctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacc 45676144  T
Q  201 tgacatatatgataattttaattaat 226  Q
    ||||||||||||||||||||||||||    
T  45676145 tgacatatatgataattttaattaat 45676170  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 37962974 - 37962857
Alignment:
Q  85 gcatgaagttcaattatggaattctcttcttgctctgagaatgctcctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcc 184  Q
    |||||||||||||| ||  ||||||||||||| | ||||||||||||||| |||||||||||||| |  |||||||||||||| || || ||||||||||    
T  37962974 gcatgaagttcaatgatcaaattctcttcttgttgtgagaatgctcctcttttcaaatcaggcctcaagtaatttatccatcttaacctgcaactcttcc 37962875  T
Q  185 cacacctctgcaaacctg 202  Q
    ||||||| ||||||||||    
T  37962874 cacacctttgcaaacctg 37962857  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 51044533 - 51044460
Alignment:
Q  129 tcctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacctg 202  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||||| ||||| |||||||| ||||| ||||    
T  51044533 tcctctcttcaaatcaggcctcaaatagtttatccatctcaatctacagctctttccacacctttgcaaccctg 51044460  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 16127399 - 16127458
Alignment:
Q  129 tcctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcccaca 188  Q
    ||||||||| | |||||  |||| |||||| ||||||||||||||||||||||| |||||    
T  16127399 tcctctcttaatatcagttcttaaataattaatccatctcaatctacaactctttccaca 16127458  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 5690758 - 5690640
Alignment:
Q  67 tacctgttgcctaggagtgcatgaagttcaattatggaattctcttcttgctctgagaatgctcctctcttcaaatcaggccttagataatttatccatc 166  Q
    ||||||||||| || | ||||||||||||||| ||  ||||||||||||  | ||||||||||||||| |||||||||||| |||  |||||||||||||    
T  5690758 tacctgttgccaagtactgcatgaagttcaatgatcaaattctcttcttattgtgagaatgctcctcttttcaaatcaggcgttaagtaatttatccatc 5690659  T
Q  167 tcaatctacaactcttccc 185  Q
    | || || || ||||||||    
T  5690658 ttaacctgcatctcttccc 5690640  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 43560520 - 43560600
Alignment:
Q  108 ctcttcttgctctgagaatgctcctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcccaca 188  Q
    ||||||||| | ||||||   ||||||||| ||||||||||| | ||| |||||||||||||||||||||||||| |||||    
T  43560520 ctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccaca 43560600  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 5849863 - 5849928
Alignment:
Q  136 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacct 201  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||| ||||    
T  5849863 ttcaaatcaggtcttagataatttatccatcttaatctacaactttttccacatctctgcagacct 5849928  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 5921232 - 5921297
Alignment:
Q  136 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacct 201  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||| ||||    
T  5921232 ttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgcagacct 5921297  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 5949124 - 5949189
Alignment:
Q  136 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacct 201  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||| ||||    
T  5949124 ttcaaatcaggtcttagataatttatccatcttaatcttcaactctttccacatctctgcagacct 5949189  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 5960389 - 5960446
Alignment:
Q  136 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctct 193  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||    
T  5960389 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctct 5960446  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 5984652 - 5984717
Alignment:
Q  136 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacct 201  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||| ||||    
T  5984652 ttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgcagacct 5984717  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 5843124 - 5843186
Alignment:
Q  139 aaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacct 201  Q
    |||||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||| ||||    
T  5843124 aaatcaggtcttagataatttatccatcttaatctacaactttttccacatctctgcagacct 5843186  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 5887260 - 5887325
Alignment:
Q  136 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacct 201  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||| || || ||||||| ||||    
T  5887260 ttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccgcatctctgcagacct 5887325  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 34626693 - 34626766
Alignment:
Q  129 tcctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacctg 202  Q
    |||||||||||||||||| || ||||| || ||||||||||||||||||||||| ||||| || ||||| ||||    
T  34626693 tcctctcttcaaatcaggtctcagatagttgatccatctcaatctacaactctttccacatctttgcaaccctg 34626766  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 44674101 - 44674042
Alignment:
Q  129 tcctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcccaca 188  Q
    ||||||||| | |||||| ||||| |||||||||||||||||||| |||||||| |||||    
T  44674101 tcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccaca 44674042  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 2590896 - 2590846
Alignment:
Q  141 atcaggccttagataatttatccatctcaatctacaactcttcccacacct 191  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  2590896 atcaggccttaaataatttatccatctcaacctacaactcttaccacacct 2590846  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 12552036 - 12551966
Alignment:
Q  130 cctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacc 200  Q
    |||||||| | ||||||||| | ||||||| |||| || || |||||||||||||||||||| | ||||||    
T  12552036 cctctcttgatatcaggcctcaaataatttgtccaccttaacctacaactcttcccacacctattcaaacc 12551966  T

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Target: scaffold0251 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 9917 - 9869
Alignment:
Q  144 aggccttagataatttatccatctcaatctacaactcttcccacacctc 192  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  9917 aggccttagataattcaaccacctcaatctacaactcttcccacacctc 9869  T

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Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 262048 - 262095
Alignment:
Q  144 aggccttagataatttatccatctcaatctacaactcttcccacacct 191  Q
    ||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  262048 aggccttagataattcagccacctcaatctacaactcttcccacacct 262095  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 28206022 - 28205964
Alignment:
Q  130 cctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcccaca 188  Q
    |||||||| ||||||||||| |||||||| ||||||||||| | |||||| ||||||||    
T  28206022 cctctctttaaatcaggcctaagataattgatccatctcaaacgacaacttttcccaca 28205964  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 42789002 - 42789062
Alignment:
Q  136 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgca 196  Q
    ||||||||||| |||| |||||||||||||||||| || ||||| || ||||| |||||||    
T  42789002 ttcaaatcaggtcttaaataatttatccatctcaacctgcaactttttccacatctctgca 42789062  T

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