View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18897_high_3 (Length: 691)
Name: NF18897_high_3
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 110 - 673
Target Start/End: Complemental strand, 35748506 - 35747943
Alignment:
| Q |
110 |
agaaaaccaggtggaaacaaacttaacgacgtcctaaccacgttaacacctttattccctgcgtcatcatcttccgttaccgtttcttcaccctcacgtg |
209 |
Q |
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| T |
35748506 |
agaaaaccaggtggaaacaaacttaacgacgtcctaaccacgttaacacctttattccctgcgtcatcatcttccgttaccgtttcttcaccctcacgtg |
35748407 |
T |
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| Q |
210 |
agccacgtgacccgctattattctcgaccaaaacacaaggacgtttataacgggtaccgagactcaacaagtccttataataatcaccgtcgtaactttc |
309 |
Q |
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| T |
35748406 |
agccacgtgacccgctattattctcgaccaaaacacaaggacgtttataacgggtaccgagactcaacaaatccttataataatcaccgtcgtaactttc |
35748307 |
T |
|
| Q |
310 |
atttacacgttttccgatcatcacaccggtgggaatcaccgtcaccggcaccgccgttggaaccctttgaacaatcgttgtaaccggtggaaccgctgca |
409 |
Q |
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| T |
35748306 |
atttacacgttttccgatcatcacaccggtgggaatcaccgtcaccggcaccgccgttggaaccctttgaacaatcgttgtaaccggtggaaccgctgca |
35748207 |
T |
|
| Q |
410 |
ggagccgctgtgcgacgacgacggagagttgaattccagtgattttttatggcgttatcggttctacctggaagaagacgagaaatcgtcgcccatttgt |
509 |
Q |
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| T |
35748206 |
ggagccgccgtgcgacgacgacggagagttgaattccagtgattttttatcgcgttatcggttctacctggaagaagacgagaaatcgtcgcccatttgt |
35748107 |
T |
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| Q |
510 |
ttccatgaactgcatgtgcttcaatgatgatgctatcctccgccggtgtaaaaggaaggtgttgaacggttggactcagctgattacaccaccgtagacg |
609 |
Q |
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| T |
35748106 |
ttccatgaactgcatgtgcttcaatgatgatgctatcctccgccggtgtaaaaggaaggtgttgaacggttggactcagctgattacaccaccgtagacg |
35748007 |
T |
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| Q |
610 |
gcatgattttcctgaacgaccggggatttcgttgcttatcaccgaccagtttcttgcaccgttt |
673 |
Q |
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| T |
35748006 |
gcatgattttcctgaacgaccggggatttcgttgcttatcaccgaccagtttcttgcaccgttt |
35747943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 46161742 - 46161679
Alignment:
| Q |
1 |
tgcataatcatgatatacatgggaactaaatattattcgattttaagccgaaatcataatgttg |
64 |
Q |
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| T |
46161742 |
tgcataatcatgatatacatgggaactaaatattattcgattttaagcggaaatcataatgttg |
46161679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 630
Target Start/End: Original strand, 46599285 - 46599340
Alignment:
| Q |
575 |
acggttggactcagctgattacaccaccgtagacggcatgattttcctgaacgacc |
630 |
Q |
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| T |
46599285 |
acggtgggactcagctgattacaccaccggagacgacatgacttgccggaacgacc |
46599340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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