View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18897_high_7 (Length: 519)
Name: NF18897_high_7
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 42056432 - 42055931
Alignment:
| Q |
1 |
agactactaagtaggtcatcatttgtagtgatgcgagtgtcttcacgatttgtaactcttgaccctggtattcaagtttataggttgttgcacagtttgg |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42056432 |
agactactaattaggtcatcatttgtagtgatgcgagtgtcttcacgatttgtaactcttgaccctggtattcaagtttataggttgttgcacagtttgg |
42056333 |
T |
|
| Q |
101 |
gatagataagttacaattgttgtaatcatatttgagatagatagttaatacattttattggtgggatttttctttggaagtaggtacttgtgtgttctac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42056332 |
gatagataagttacaattgttgtaatcatatttgagatagatagttaatacattttattggtgggatttttctttggaagtaggtacttgtgtgttctac |
42056233 |
T |
|
| Q |
201 |
cactttctctgtgttgtgctcatgtgtattctatcaaatatccttgaatatgtgggtaaattcgttggcatgtcatgtgcatgcagnnnnnnncaacaaa |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42056232 |
cactttctctgtgttgtgctcatgtgtattctatcaaatatccttgaatatgtgggtaaattcgttggcatgtcatgtgcatgcagtttttttcaacaaa |
42056133 |
T |
|
| Q |
301 |
taatttctcaaattggttaatcgtccacttcaactaaattgtacgaatcaatttgatcatgcattcatgctttacttttatttctcatttgatgacaaaa |
400 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42056132 |
taatttcccaaattggttaatcgtccacttcaactaaattgtccgaatcaatttgatcatgcattcatgctttacttttatttctcatttgatgacaaaa |
42056033 |
T |
|
| Q |
401 |
ttaatcaattgttcaagtagcataagacttgacaaagtagtaatagcaatatcaataatccttgcaataacagttactctcttaagtcttaacatatctt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42056032 |
ttaatcaattgttcaagtagcataagacttgacaaagtagtaatagcaatatcaataatccttgcaataacagttactctcttaagtcttaacatatctt |
42055933 |
T |
|
| Q |
501 |
tg |
502 |
Q |
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|| |
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| T |
42055932 |
tg |
42055931 |
T |
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