View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18897_low_1 (Length: 886)
Name: NF18897_low_1
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 552; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 305 - 868
Target Start/End: Complemental strand, 35748506 - 35747943
Alignment:
| Q |
305 |
agaaaaccaggtggaaacaaacttaacgacgtcctaaccacgttaacacctttattccctgcgtcatcatcttccgttaccgtttcttcaccctcacgtg |
404 |
Q |
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| T |
35748506 |
agaaaaccaggtggaaacaaacttaacgacgtcctaaccacgttaacacctttattccctgcgtcatcatcttccgttaccgtttcttcaccctcacgtg |
35748407 |
T |
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| Q |
405 |
agccacgtgacccgctattattctcgaccaaaacacaaggacgtttataacgggtaccgagactcaacaagtccttataataatcaccgtcgtaactttc |
504 |
Q |
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| T |
35748406 |
agccacgtgacccgctattattctcgaccaaaacacaaggacgtttataacgggtaccgagactcaacaaatccttataataatcaccgtcgtaactttc |
35748307 |
T |
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| Q |
505 |
atttacacgttttccgatcatcacaccggtgggaatcaccgtcaccggcaccgccgttggaaccctttgaacaatcgttgtaaccggtggaaccgctgca |
604 |
Q |
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| T |
35748306 |
atttacacgttttccgatcatcacaccggtgggaatcaccgtcaccggcaccgccgttggaaccctttgaacaatcgttgtaaccggtggaaccgctgca |
35748207 |
T |
|
| Q |
605 |
ggagccgctgtgcgacgacgacggagagttgaattccagtgattttttatggcgttatcggttctacctggaagaagacgagaaatcgtcgcccatttgt |
704 |
Q |
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| T |
35748206 |
ggagccgccgtgcgacgacgacggagagttgaattccagtgattttttatcgcgttatcggttctacctggaagaagacgagaaatcgtcgcccatttgt |
35748107 |
T |
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| Q |
705 |
ttccatgaactgcatgtgcttcaatgatgatgctatcctccgccggtgtaaaaggaaggtgttgaacggttggactcagctgattacaccaccgtagacg |
804 |
Q |
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| T |
35748106 |
ttccatgaactgcatgtgcttcaatgatgatgctatcctccgccggtgtaaaaggaaggtgttgaacggttggactcagctgattacaccaccgtagacg |
35748007 |
T |
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| Q |
805 |
gcatgattttcctgaacgaccggggatttcgttgcttatcaccgaccagtttcttgcaccgttt |
868 |
Q |
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| T |
35748006 |
gcatgattttcctgaacgaccggggatttcgttgcttatcaccgaccagtttcttgcaccgttt |
35747943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 35748719 - 35748591
Alignment:
| Q |
86 |
tatatattgaaattttttcactttcgaagtgttgaatcaggagctaacccaccaccaaggcgtatcttatcaacataattcctaacttcctctgctatca |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35748719 |
tatatattgaaattttttcactttcgaagtgttgaatcaggagctaacccaccaccaaggcgcatcttatcaacataattcctaacttcctctgctatca |
35748620 |
T |
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| Q |
186 |
tgcgctgaagcatcgacctcaatttctca |
214 |
Q |
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| T |
35748619 |
tgcgctgaagcatcgacctcaatttctca |
35748591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 770 - 825
Target Start/End: Original strand, 46599285 - 46599340
Alignment:
| Q |
770 |
acggttggactcagctgattacaccaccgtagacggcatgattttcctgaacgacc |
825 |
Q |
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| T |
46599285 |
acggtgggactcagctgattacaccaccggagacgacatgacttgccggaacgacc |
46599340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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