View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18897_low_11 (Length: 405)
Name: NF18897_low_11
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 389
Target Start/End: Complemental strand, 29474315 - 29473940
Alignment:
| Q |
12 |
gaatataagtgtgagtgtcttaaaaaattgatgaataagctcagttttttatggctcatttttggctcataccaaaattctcttcttcaaacaacaatct |
111 |
Q |
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| T |
29474315 |
gaatataagtgtgagtgtcttaaaaaattgatgagtaagctcagttttttatggctcatttttggctcataccaaaattctcttcttcatacaacaatct |
29474216 |
T |
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| Q |
112 |
ttagcattttagtttgaaaaaattcttatacatacnnnnnnnngtt-gctataggaggaattcatacaatttgcacatttattagcattaaggtaatctt |
210 |
Q |
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|||||||||| |||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29474215 |
ttagcatttttgtttgaaaaaattcttatacatacttttttttttttgctatagga---attcatacaatttgcacatttattagcattaaggtaatctt |
29474119 |
T |
|
| Q |
211 |
tgtgatgtcaagaattttggacactcttagtgaatttgcattaaaagggtaaaaccattgcatcaagaatattagcatatacattacacatatgggtttc |
310 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29474118 |
tgtgatgtcaagaatattggacactcttagtgaatttgcattaaaagggtaaaaccattgcatcaagaatattagcatatacattacacatatgggtttc |
29474019 |
T |
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| Q |
311 |
ataacatggacaccaagccatacatggcaaccaacaatgacaacagatacaactgcgtcgagttattggttgaactgga |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29474018 |
ataacatggacaccaagccatacatggcaaccaacaatgacaacagatacaactgcgtcgagttattggttgaactgga |
29473940 |
T |
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