View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18897_low_13 (Length: 390)
Name: NF18897_low_13
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 3575299 - 3575672
Alignment:
| Q |
1 |
taatttattaataataagtaaaaatagatgctcacatttgttgcttgctttgtattgaaacaagaagaattatgcaaaataggaagtgatgaacaaactg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3575299 |
taatttattaataataagtaaaagtagatgctcacatttgttgcttgctttgtattgaaacaagaagagttatgcaaaataggaagtgatgaacaaactg |
3575398 |
T |
|
| Q |
101 |
aatggtacttctttagtcataaagataagaagtatccaacgagcagtcgtacaaatagagctacaaaagcaggattctggaaagctacaggaagagacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575399 |
aatggtacttctttagtcataaagataagaagtatccaacgagcagtcgtacaaatagagctacaaaagcaggattctggaaagctacaggaagagacaa |
3575498 |
T |
|
| Q |
201 |
agcaatttattcaaaccatatttgtctgattggaatgagaaagactcttgtcttctataaaggaagagcacctaatggtcaaaaatctgattggatcatg |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575499 |
agcaatttattctaaccatatttgtctgattggaatgagaaagactcttgtcttctataaaggaagagcacctaatggtcaaaaatctgattggatcatg |
3575598 |
T |
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| Q |
301 |
catgagtatcgcttagaaacaaatgaaaatggaactactcctcaggtaataatacttataataagcacatattt |
374 |
Q |
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| T |
3575599 |
catgagtatcgcttagaaacaaatgaaaatggaactactcctcaggtaataatacttataataagcacatattt |
3575672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 8450197 - 8450273
Alignment:
| Q |
229 |
attggaatgagaaagactcttgtcttctataaaggaagagcacctaatggtcaaaaatctgattggatcatgcatga |
305 |
Q |
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| T |
8450197 |
attgggatgaggaagacccttgttttctacaaaggaagagcccctaatggacagaaatctgattggatcatgcatga |
8450273 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 66 - 334
Target Start/End: Complemental strand, 42048748 - 42048483
Alignment:
| Q |
66 |
agaattatgcaaaataggaagtgatgaacaaactgaatggtacttctttagtcataaagataagaagtatccaacgagcagtcgtacaaatagagctaca |
165 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| | | ||| || |||||||| ||| |
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| T |
42048748 |
agaattatgcaaaataggaagtgatgaacaaaatgactggtatttctttagtcataaagataagaagtatccaacaggaactcgaacgaatagagcaaca |
42048649 |
T |
|
| Q |
166 |
aaagcaggattctggaaagctacaggaagagacaaagcaatttattcaaaccatatttgtctgattggaatgagaaagactcttgtcttctataaaggaa |
265 |
Q |
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|||||||||||||||||||| ||||||||||| || ||||| || ||||| || ||| |||| |||| |||||||||||||| || || || |||||| |
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| T |
42048648 |
aaagcaggattctggaaagccacaggaagagataaggcaatatactcaaaaca-att--tctggttgggatgagaaagactctagtgttttacaaaggac |
42048552 |
T |
|
| Q |
266 |
gagcacctaatggtcaaaaatctgattggatcatgcatgagtatcgcttagaaacaaatgaaaatggaa |
334 |
Q |
| |
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| || || ||||| || |||||||||||||||||||||||||| || | ||||| ||| ||||||||| |
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| T |
42048551 |
gtgccccaaatggacagaaatctgattggatcatgcatgagtaccgtcttgaaactaatcaaaatggaa |
42048483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 332
Target Start/End: Original strand, 12851189 - 12851445
Alignment:
| Q |
73 |
tgcaaaataggaagtgatgaacaaactgaatggtacttctttagtcataaagataagaagtatccaacgagcagtcgtacaaatagagctacaaaagcag |
172 |
Q |
| |
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|||| |||||||| || ||||||| ||| ||||| || ||||| ||||||||||||||||||||||| | | | ||||||||||| || ||| | |
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| T |
12851189 |
tgcagaataggaacagaagaacaaaatgagtggtatttttttagccataaagataagaagtatccaactggtacaagaacaaatagagcaactgcagctg |
12851288 |
T |
|
| Q |
173 |
gattctggaaagctacaggaagagacaaagcaatttattcaaaccatatttgtctgattggaatgagaaagactcttgtcttctataaaggaagagcacc |
272 |
Q |
| |
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|||| |||||||| ||||||||||||||| |||| ||| || |||| || |||| |||||||| || || | || || |||||||| |||| || |
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| T |
12851289 |
gattttggaaagcaacaggaagagacaaatcaatctatagtaagcataatt---tgataggaatgaggaaaacattggtgttttataaaggtcgagctcc |
12851385 |
T |
|
| Q |
273 |
taatggtcaaaaatctgattggatcatgcatgagtatcgcttagaaacaaatgaaaatgg |
332 |
Q |
| |
|
||||| ||||| || |||||||| |||||||||||| | | |||||| |||||||||| |
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|
| T |
12851386 |
caatggacaaaagtcagattggataatgcatgagtataggcttgaaacagatgaaaatgg |
12851445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 12276670 - 12276746
Alignment:
| Q |
229 |
attggaatgagaaagactcttgtcttctataaaggaagagcacctaatggtcaaaaatctgattggatcatgcatga |
305 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||| ||| |||| ||||| |||||||||| |||||||| |
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| T |
12276670 |
attggaatgagaaagactcttgtgttctacaaaggtagagctcctcatggacaaaagactgattggattatgcatga |
12276746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 9003367 - 9003448
Alignment:
| Q |
228 |
gattggaatgagaaagactcttgtcttctataaaggaagagcacctaatggtcaaaaatctgattggatcatgcatgagtat |
309 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| | || ||| |||| |||||||||||||||||||||||||||||| |
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| T |
9003367 |
gattggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagtat |
9003448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 32225607 - 32225528
Alignment:
| Q |
226 |
ctgattggaatgagaaagactcttgtcttctataaaggaagagcacctaatggtcaaaaatctgattggatcatgcatga |
305 |
Q |
| |
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|||||||||||||| ||||| || || ||||| |||||||||||||||||||| || ||| ||||||||||||||||||| |
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| T |
32225607 |
ctgattggaatgaggaagacactcgttttctacaaaggaagagcacctaatggacagaaaactgattggatcatgcatga |
32225528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 26496938 - 26496974
Alignment:
| Q |
275 |
atggtcaaaaatctgattggatcatgcatgagtatcg |
311 |
Q |
| |
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||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
26496938 |
atggtcacaaaactgattggatcatgcatgagtatcg |
26496974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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