View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18897_low_16 (Length: 341)
Name: NF18897_low_16
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 8345660 - 8345965
Alignment:
| Q |
18 |
aatccaaacactgaaaaagatctagatgatgaccaaactactttgttgatccaattaaaagaaaacatacatctcttatattttacaattaacaagtcac |
117 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8345660 |
aatccaaacaccgaaaaagatctagatg---accaaactactttattgatccaattaaaagaaaacatacatctcttatattttacaattaacaagtcac |
8345756 |
T |
|
| Q |
118 |
tttgtaaggaagtcacaatttaatattgtttcaacatatattaatgtaaagaaatttgtgtcttaagtatatgcataggatattttatgaccttataaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8345757 |
tttgtaaggaagtcacaatttaatattgtttcaacatatattaatgtaaagaaatttgtgtcttaagtatatgcataggatattttatgaccttataaat |
8345856 |
T |
|
| Q |
218 |
atagagatgaattgttgaaatatattcaaacaaaacaatctctaaaagagtggtaataagcaaaagaaaatcatataacaaattgaatcatggggtgcaa |
317 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8345857 |
atagagatgaattgtagaaatatattcaaacaaaacaatctctaaaagagtggtaataagcaaaagaaaatcatataacaaattgaatcatggggtgcaa |
8345956 |
T |
|
| Q |
318 |
gaatatgat |
326 |
Q |
| |
|
||| ||||| |
|
|
| T |
8345957 |
gaagatgat |
8345965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University