View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18897_low_17 (Length: 337)
Name: NF18897_low_17
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 36915109 - 36914916
Alignment:
| Q |
1 |
cctacgatagaagaatttgatgagaacatcaataaaagtacttctacttcaatgcttcaaacttcttcatcaacnnnnnnnccttttgatttaaatgatg |
100 |
Q |
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| T |
36915109 |
cctacgatagaaaaatttgatgataacatcaatcaaagtacttctacttcaatgcttcaaacttcttcatcaactctttttccttttgatttaaatgatg |
36915010 |
T |
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| Q |
101 |
acatatttatggaggatgatacaccaatagaagaaataatgcctcaatcaaatttaaatactggtatgtacatctctaagtgattccatttgtg |
194 |
Q |
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| T |
36915009 |
acatatttatggaggatgatacaccaatagaagaaataatgcctcaatcaaatttaaatactagtatgtacatctctaagtgattccatttgtg |
36914916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 239 - 320
Target Start/End: Complemental strand, 36914872 - 36914791
Alignment:
| Q |
239 |
cttcatgtttatgtacacagtatttagcaatgctttcatgaatctccattgaacatataatactctaaatgaatctccattg |
320 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36914872 |
cttcatgtttatgtacagagtatttagcaatgctttcatgaatctccattgaacatataatactctaaatgaatctccattg |
36914791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 11168422 - 11168229
Alignment:
| Q |
1 |
cctacgatagaagaatttgatgagaacatcaataaaagtacttctacttcaatgcttcaaacttcttcatcaacnnnnnnnccttttgatttaaatgatg |
100 |
Q |
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|||||||||||| |||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11168422 |
cctacgatagaaaaatttgatgataacatcaatcaaattacttctacttcaatgcttcaaacttcttcatcaactctttttccttttgatttaaatgatg |
11168323 |
T |
|
| Q |
101 |
acatatttatggaggatgatacaccaatagaagaaataatgcctcaatcaaatttaaatactggtatgtacatctctaagtgattccatttgtg |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11168322 |
acatatttatggaggatgatacaccaatagaagaaataatgcctcaatcaaatttaaatactagtatgtacatctctaagtgattccatttgtg |
11168229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 239 - 320
Target Start/End: Complemental strand, 11168185 - 11168104
Alignment:
| Q |
239 |
cttcatgtttatgtacacagtatttagcaatgctttcatgaatctccattgaacatataatactctaaatgaatctccattg |
320 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11168185 |
cttcatgtttatgtacagagtatttagcaatgctttcatgaatctccattgaacatataatactctaaatgaatctccattg |
11168104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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