View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18897_low_20 (Length: 271)

Name: NF18897_low_20
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18897_low_20
NF18897_low_20
[»] chr7 (2 HSPs)
chr7 (16-253)||(28841321-28841558)
chr7 (58-130)||(27804618-27804690)
[»] chr1 (4 HSPs)
chr1 (18-130)||(30091885-30091997)
chr1 (19-130)||(12928685-12928796)
chr1 (59-130)||(3215138-3215209)
chr1 (61-126)||(3158337-3158402)
[»] chr6 (3 HSPs)
chr6 (57-130)||(32542715-32542788)
chr6 (52-130)||(5477265-5477343)
chr6 (72-130)||(12200312-12200370)
[»] chr8 (2 HSPs)
chr8 (16-130)||(25939072-25939186)
chr8 (52-126)||(30273601-30273675)
[»] chr5 (3 HSPs)
chr5 (72-130)||(14489242-14489300)
chr5 (72-130)||(28463241-28463299)
chr5 (76-130)||(6291550-6291604)
[»] scaffold0036 (2 HSPs)
scaffold0036 (52-125)||(44358-44431)
scaffold0036 (72-125)||(53776-53829)
[»] chr2 (2 HSPs)
chr2 (52-125)||(27950968-27951041)
chr2 (58-130)||(14150240-14150312)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 28841558 - 28841321
Alignment:
Q  16 atgaggttgcttacactctagttcgagaggtcagtgtcttaactggtctccatatctttaatgatgcacctctttatattttgacattgattattaatga 115  Q
    |||||||||||||| |||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28841558 atgaggttgcttactctctagttcgagaggtcactgtcttagttggtctccatatctttaatgatgcacctctttatattttgactttgattattaatga 28841459  T
Q  116 aaaactataagctatatattttctatcttagttctacggtttcaggtctcggtaatttgaggcagactgaaactaagtaaaatataatgaataaattatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28841458 aaaactataagctatatattttctatcttagttctacggttccaggtctcagtaatttgaggcagactgaaactaagtaaaatataatgaataaattatt 28841359  T
Q  216 aaatcagtatcaaaattcaaattctcttgaacgattcg 253  Q
    ||||||||||  ||||||  ||||||||||||||||||    
T  28841358 aaatcagtattgaaattcggattctcttgaacgattcg 28841321  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 27804690 - 27804618
Alignment:
Q  58 ctggtctccatatctttaatgatgcacctctttatattttgacattgattattaatgaaaaactataagctat 130  Q
    |||||| |||| |||||||||||| |||||| | ||||||||| ||||||| ||||||||| |||||| ||||    
T  27804690 ctggtccccatgtctttaatgatgtacctctatgtattttgactttgattaataatgaaaagctataaactat 27804618  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 30091997 - 30091885
Alignment:
Q  18 gaggttgcttacactctagttcgagaggtcagtgtcttaactggtctccatatctttaatgatgcacctctttatattttgacattgattattaatgaaa 117  Q
    ||||| ||| ||||||||| |||||||| || | |||||||| |||||||||||||||||| |||||| |||| ||||| ||| ||||||||||||||||    
T  30091997 gaggtcgctcacactctagctcgagaggacactttcttaactagtctccatatctttaatgttgcaccactttgtatttcgactttgattattaatgaaa 30091898  T
Q  118 aactataagctat 130  Q
    | |||||||||||    
T  30091897 agctataagctat 30091885  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 12928685 - 12928796
Alignment:
Q  19 aggttgcttacactctagttcgagaggtcagtgtcttaactggtctccatatctttaatgatgcacctctttatattttgacattgattattaatgaaaa 118  Q
    |||||||| ||||| ||  |||||||  || | |||||||| ||| |||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||    
T  12928685 aggttgctcacactttatctcgagagaccactttcttaacttgtccccatatctttaatgttgcacctctttgtatttcgactttgattattaatgaaaa 12928784  T
Q  119 actataagctat 130  Q
     |||||||||||    
T  12928785 gctataagctat 12928796  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 3215138 - 3215209
Alignment:
Q  59 tggtctccatatctttaatgatgcacctctttatattttgacattgattattaatgaaaaactataagctat 130  Q
    ||||| |||| |||||||||||| |||||| | ||||||||| ||||||| ||||||||| |||||||||||    
T  3215138 tggtccccatgtctttaatgatgtacctctatgtattttgactttgattaataatgaaaagctataagctat 3215209  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 3158402 - 3158337
Alignment:
Q  61 gtctccatatctttaatgatgcacctctttatattttgacattgattattaatgaaaaactataag 126  Q
    |||| ||||||||||||  ||||||||||| ||||| ||| ||||||||| ||||| | |||||||    
T  3158402 gtcttcatatctttaatactgcacctctttgtatttcgactttgattattgatgaacagctataag 3158337  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 32542788 - 32542715
Alignment:
Q  57 actggtctccatatctttaatgatgcacctctttatattttgacattgattattaatgaaaaactataagctat 130  Q
    |||||||  ||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||    
T  32542788 actggtcctcatgtctttaatgatgcacctccttatattttgacattgattaataatgaaaagctataagctat 32542715  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 5477343 - 5477265
Alignment:
Q  52 tcttaactggtctccatatctttaatgatgcacctctttatattttgacattgattattaatgaaaaactataagctat 130  Q
    ||||| |||||| |||| ||||||||||||||||||||| ||| ||||| ||||||| ||||||||| |||||| ||||    
T  5477343 tcttagctggtccccatgtctttaatgatgcacctctttgtatcttgactttgattaataatgaaaagctataacctat 5477265  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 12200370 - 12200312
Alignment:
Q  72 tttaatgatgcacctctttatattttgacattgattattaatgaaaaactataagctat 130  Q
    |||||||||| |||||||  ||||||||||||||||| ||||||||| |||||||||||    
T  12200370 tttaatgatgtacctcttagtattttgacattgattaataatgaaaagctataagctat 12200312  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 25939072 - 25939186
Alignment:
Q  16 atgaggttgcttacactctagttcgagaggtcagtgtcttaactggtctccatatctttaatgatgcacctctttatattttgacattgattattaatga 115  Q
    ||||||| ||| ||||| ||| |||||||| || | ||||| ||  || |||||||||||||| ||||||||||| ||||| ||| |||| |||||||||    
T  25939072 atgaggtcgctcacactttagctcgagaggccactttcttagctaatccccatatctttaatgttgcacctctttgtatttcgactttgagtattaatga 25939171  T
Q  116 aaaactataagctat 130  Q
    |||||||||| ||||    
T  25939172 aaaactataacctat 25939186  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 30273675 - 30273601
Alignment:
Q  52 tcttaactggtctccatatctttaatgatgcacctctttatattttgacattgattattaatgaaaaactataag 126  Q
    |||||||||||| |||| | || ||||||  | ||||||| ||||||||| |||||| ||||||||| |||||||    
T  30273675 tcttaactggtccccatgttttcaatgatataactctttacattttgacaatgattaataatgaaaagctataag 30273601  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 14489300 - 14489242
Alignment:
Q  72 tttaatgatgcacctctttatattttgacattgattattaatgaaaaactataagctat 130  Q
    |||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||    
T  14489300 tttaatgatgtacctctttgtattttgacattgattaataatgaaaaactataagctat 14489242  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 28463241 - 28463299
Alignment:
Q  72 tttaatgatgcacctctttatattttgacattgattattaatgaaaaactataagctat 130  Q
    |||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||    
T  28463241 tttaatgatgtacttctttgtattttgacattgattaataatgaaaaactataagctat 28463299  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 6291550 - 6291604
Alignment:
Q  76 atgatgcacctctttatattttgacattgattattaatgaaaaactataagctat 130  Q
    |||||| |||||| | ||||||||| ||||||| |||||||||||||||||||||    
T  6291550 atgatgtacctctatgtattttgactttgattaataatgaaaaactataagctat 6291604  T

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Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 44358 - 44431
Alignment:
Q  52 tcttaactggtctccatatctttaatgatgcacctctttatattttgacattgattattaatgaaaaactataa 125  Q
    |||||||| ||| || ||| ||||||| || |||||||| ||||| ||| ||||||||||||||||||||||||    
T  44358 tcttaactagtccccgtatttttaatgttgtacctctttgtatttcgactttgattattaatgaaaaactataa 44431  T

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Target: scaffold0036; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 53776 - 53829
Alignment:
Q  72 tttaatgatgcacctctttatattttgacattgattattaatgaaaaactataa 125  Q
    ||||||| || |||||||||||||| ||| |||||||||||||||||| |||||    
T  53776 tttaatgttgtacctctttatatttcgactttgattattaatgaaaaattataa 53829  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 27950968 - 27951041
Alignment:
Q  52 tcttaactggtctccatatctttaatgatgcacctctttatattttgacattgattattaatgaaaaactataa 125  Q
    |||||||| ||| || ||| ||||||| || |||||||| ||||| ||| ||||||||||||||||||||||||    
T  27950968 tcttaactagtccccgtatttttaatgttgtacctctttgtatttcgactttgattattaatgaaaaactataa 27951041  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 14150312 - 14150240
Alignment:
Q  58 ctggtctccatatctttaatgatgcacctctttatattttgacattgattattaatgaaaaactataagctat 130  Q
    |||||| |||| | |||||| ||| |||||| | ||||||||| ||||||| ||||||||| |||||||||||    
T  14150312 ctggtccccatgtatttaataatgtacctctatgtattttgactttgattaataatgaaaagctataagctat 14150240  T

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