View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18897_low_23 (Length: 242)
Name: NF18897_low_23
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_low_23 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 242
Target Start/End: Complemental strand, 45676478 - 45676258
Alignment:
| Q |
23 |
tagctaactcttcctccagaatatttccacgttggttctgacacaaagagtttnnnnnnnn-catttgaaagaggttaattgaagaaagtgcacatggga |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45676478 |
tagctaactcttcctccagaatatttccacgttggttctgacacaaagagtttaaaaaaaaacatttgatagaggttaattgaagaaagtgcacatggga |
45676379 |
T |
|
| Q |
122 |
agacattcttgttgctacaagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatggtcatggat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45676378 |
agacattcttgttgctacaagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatggtcatggat |
45676279 |
T |
|
| Q |
222 |
gttggagctcagttccaaaat |
242 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45676278 |
gttggagctcagttccaaaat |
45676258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 237
Target Start/End: Original strand, 45437737 - 45437858
Alignment:
| Q |
116 |
atgggaagacattcttgttgctacaagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatggtc |
215 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | |||||||| ||||| || || || |||||||| ||||||||| |||| || ||| |||||| |
|
|
| T |
45437737 |
atgggaagacactcttgttgctacaagcagaagcttaggaaaggtctatggtcacctgaggaggatgaaaaacttttgaatcatattactaaatatggtc |
45437836 |
T |
|
| Q |
216 |
atggatgttggagctcagttcc |
237 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
45437837 |
atggatgttggagttcagttcc |
45437858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 37962620 - 37962741
Alignment:
| Q |
113 |
cacatgggaagacattcttgttgctacaagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatg |
212 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| | | ||||| |||||||| || || |||||||| |||||||||||||| || |||||||||| |
|
|
| T |
37962620 |
cacatgggaagacactcttgctgctacaagcagaaattaaggaaaggactttggtctcctgaggaagatgagaagcttttgaattacattaccaaacatg |
37962719 |
T |
|
| Q |
213 |
gtcatggatgttggagctcagt |
234 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
37962720 |
gtcatggatgttggagttcagt |
37962741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 38269858 - 38269740
Alignment:
| Q |
116 |
atgggaagacattcttgttgctacaagcagaagcttcgtaaaggtctttggtccccagaagaagatgaaaagcttttgaattatatcaccaaacatggtc |
215 |
Q |
| |
|
|||||||| || || ||||| ||||||||||||||| | |||||||| ||||| ||||||||||||||||| || ||| |||| || || |||||| |
|
|
| T |
38269858 |
atgggaaggcactcatgttgttacaagcagaagcttaggaaaggtctatggtcaccagaagaagatgaaaaactactgaggcatataacaaagtatggtc |
38269759 |
T |
|
| Q |
216 |
atggatgttggagctcagt |
234 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
38269758 |
atggatgttggagttcagt |
38269740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University