View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18897_low_24 (Length: 230)
Name: NF18897_low_24
Description: NF18897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18897_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 34938009 - 34938203
Alignment:
| Q |
18 |
tgcaacgttaaacatcaaggaccaaaatgaatattagccatataaaactactccacttgcatttgggagggttttggaaactcatcgaaattcgaaaggg |
117 |
Q |
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|||||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34938009 |
tgcaactttaaaaatcatggaccaaaatgaatattacccatataaaactactccacttgcatttgggagggttttggaaactcatcgaaattcgaaaggg |
34938108 |
T |
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| Q |
118 |
tttagaaaaatgagcccaatacagcgagttttactcctccgtctccgatccaccacaaccaactactccaccgtcgccaccaccactcgcaaatc |
212 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34938109 |
tttagaaaaatgagcccaatacggcgagttttactcctccgtctccgatccaccaccaccaactactccaccgtcgccaccaccactcgcaaatc |
34938203 |
T |
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